FMO08144.5prime Sequence
859 bp (859 high quality bases) assembled on 2010-03-10
> FMO08144.5prime
CAGTCGACATGAAGCCACAAGGAATACCACCGACTACTACACGAATCAGC
CAGACCAAGATGTCCTTTCGCGGCAAGAATGCAGTGGTGACCGGTGGAGC
TGGAGGCATTGGACTGCAGGTGTCCAAGCAGCTCCTGGCCGCTGGAGCAG
CGAAGGTGGCCATCATTGATTTGCAGGATAATCTGGAGGAGTTTGTAAAA
CTTAGGGCCGCTCATCCCACCCAAAGCGTAATGATCATCAAGATGGATGT
GGCGAACAAGAAGGGTGTGGAAGCCACCTATGAGGAGATAGCCAAGACCT
TCGGTAACATCGATATTGTGGTCAATGTAGCCGGGATTTTTAACGACAAG
GATGTGCAGAGGACTCTGTTGGTAAATCTCGGTGGAATCATCAATTCCAC
ACTGAGTGCATTGCCCTACATGGGCAAGGATAATGGCGGCAAGGGTGGCA
TTGTGGTTAACATGAGCTCGGTGGTGGGTCTGGATCCAATGTTCATCATT
CCCGTTTACGGAGCCACCAAGGCTGGCATCATCAACTTCACCCGGTGCTT
GGCGAACGAAAAGTACTATCAACGCTCGGGCATCAAGTTTGTGACTGTTT
GTCCTGGAGCTACAATGACGGACATGTTCACCAACTTTACGGAGAAGATC
ATCTTCCCGGAAACGAGTGACGAGACCTATAGGATCCTGGATAGGCTAAA
CAAGCAGAGTGCCGCTGATGTCTCTCGATGCATTCTGAATGTCCTGAGAA
GGACAAGAACGGAGCTGTCTATGTCATCGAGGGTAAGCGCGTTTACCCTT
TGGAAATTAAGCCCCAGTGGACGGGCAAGGAACAGGCCCTTGCAAGCTTT
CTAGACCAT
FMO08144.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdh-RA | 945 | CG4899-RA | 17..850 | 9..841 | 4145 | 99.9 | Plus |
| Pdh-RC | 920 | CG4899-RC | 1..825 | 18..841 | 4100 | 99.9 | Plus |
| Pdh-RB | 942 | CG4899-RB | 17..847 | 9..841 | 4090 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16353680..16354082 | 554..152 | 2015 | 100 | Minus |
| 3L | 28110227 | 3L | 16353328..16353616 | 841..554 | 1395 | 99.7 | Minus |
| 3L | 28110227 | 3L | 16354138..16354281 | 152..9 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:19 has no hits.
FMO08144.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:40 Download gff for
FMO08144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RA | 8..854 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:03 Download gff for
FMO08144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RA | 8..854 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:22 Download gff for
FMO08144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RA | 8..854 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:22 Download gff for
FMO08144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16353324..16353615 | 555..846 | 98 | <- | Minus |
| 3L | 16353680..16354081 | 153..554 | 100 | <- | Minus |
| 3L | 16354138..16354290 | 1..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:03 Download gff for
FMO08144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16346424..16346715 | 555..846 | 98 | <- | Minus |
| arm_3L | 16346780..16347181 | 153..554 | 100 | <- | Minus |
| arm_3L | 16347238..16347390 | 1..152 | 97 | | Minus |
