FMO08145.5prime Sequence
1124 bp (1025 high quality bases) assembled on 2010-03-10
> FMO08145.5prime
CAGTCGACATGCTAGAACCGCCGAAATTTATAGAGAATGATTGCTACAAC
GGCAGCCGGACCTTCACTTGGCTGGCGGATATGGTGGGCCTCTCCGTGGA
CTTGGTAAACTTTTTGATTTGCCAAATATCTGCTCTCTTCCTGGCCTCGC
TATTTCGGTCGATGCTGCATCCTTCGAAGGTTTCCAGCAAATTGCGCCAC
ACATTCGCCCTATCGATTGGCCTGGCCTTCGGCTACTTTTGCTTTGGTCA
GCAGGCAATCCACATTGCCGGATTGCCGGCAATATGTTACATCGTTATCC
GCACCCAAGATCCACGTATTGTCCAAAGAGCCGTCCTGCTGGTAGCCATG
AGTTATCTGCTGTGCGTACATTTGATGCGCCAGCTTTACGACTACGGATC
CTACGCCCTGGACATAACCGGGCCCCTTATGATCATCACTCAGAAGGTAA
CCAGCCTGGCGTTCAGCATTCACGATGGGTTTGTGCGGGGCGATGAGGAA
CTCACCAAAGCGCAACAGTACCACGCCATCCGCAAAATGCCCTCTGCTTT
GGAGTACTTCTCCTACGTGTGGCACTTCCAAAGCATCCTAGCCGGTCCTC
TCGTTTTCTACAAGGATTATATCGAGTTTGTCGAAGGCTACAATTTGCTT
AGTACTCCACCGGGCAATGGAAATCTCGACAGCAGCAAGAGAGAAGTAGT
ACTGGAACCTTCGCCTACTAAAGCGGTAATACGTAAAGTAGTTGGTAGTC
TTGTGTGCGCTTTCATCTTCATGAAGTTCGTGAAAATATATCCCGTGAAA
GACATGAAGGAGGATGACTTTATGAACAATACCAGCATGGTTTACAAGTA
CTGGTACGCCATGATGGCTACCACCTGCATACGCTTTAAGTATTATCACG
CCTGGCTCCTAGCGGATGCCATATGCAACAACTCATGTCTAGGTTTCACC
GGCTACGATAGGATGGCATTCCAGTGGGACTGAAATCTAACATCAATGTG
CTTGTCGTTCGAGTTTCACGAACATGCGCCGATGCATCAACAACTGGAAC
TGCGCACCACCGCTGGCGGCAGCTTGTCTATTGACGAGTGCCCACAATAC
GACGCTCCTAACCTTCGCCTCAGG
FMO08145.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-RE | 4791 | CG18445-RE | 274..1398 | 9..1119 | 5100 | 97.8 | Plus |
| oys-RB | 3850 | CG18445-RB | 274..1398 | 9..1119 | 5100 | 97.8 | Plus |
| oys-RA | 3613 | CG18445-RA | 274..1398 | 9..1119 | 5100 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10038581..10038928 | 1013..669 | 1470 | 97.4 | Minus |
| 2R | 25286936 | 2R | 10039626..10039850 | 328..104 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 10039172..10039345 | 669..496 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 10039403..10039574 | 498..327 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 10048249..10048346 | 106..9 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:46 has no hits.
FMO08145.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:42 Download gff for
FMO08145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18445-RA | 266..1341 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:04 Download gff for
FMO08145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 267..1342 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:52 Download gff for
FMO08145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 267..1342 | 1..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:52 Download gff for
FMO08145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10038581..10038928 | 669..1013 | 97 | <- | Minus |
| 2R | 10039173..10039343 | 498..668 | 100 | <- | Minus |
| 2R | 10039404..10039572 | 329..497 | 100 | <- | Minus |
| 2R | 10039626..10039849 | 105..328 | 100 | <- | Minus |
| 2R | 10048251..10048353 | 1..104 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:04 Download gff for
FMO08145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5926086..5926433 | 669..1013 | 97 | <- | Minus |
| arm_2R | 5926678..5926848 | 498..668 | 100 | <- | Minus |
| arm_2R | 5926909..5927077 | 329..497 | 100 | <- | Minus |
| arm_2R | 5927131..5927354 | 105..328 | 100 | <- | Minus |
| arm_2R | 5935756..5935858 | 1..104 | 97 | | Minus |
