FMO08146.5prime Sequence
882 bp (811 high quality bases) assembled on 2010-03-10
> FMO08146.5prime
CAGTCGACATGGCCGATGGAAATGGGCTGCCAGCGGGTGCAGCTTCCGGC
GGCATGGAAGCCGGGCAGACAGTGAATGGAGCGGGATCCGCCAGCCCCAC
GCCCACCTCCAGCTCGGGGGCGGGGGCCAGTGGGAGTGCCAATCAAGGAT
ATCATCAATTAAGCGTGACAATCGAGGAGGCTTCGCTGCGCAACAATGGC
TTCCTCAAGCCAAATCCCTACGTGGAGCTCTTGATTGACAGCAAAAGCAA
GCGGAAAACGGACCTGGTGAAGAACAGCTATTTGCCCAAGTGGAACGAGG
AGTTCACAGTGCTGATTACACCCAATTCAACGCTGCACTTCAAAGTGCTG
GATCACTCCAGTTTCCGTAAAGATGCCATGCTTGGAGAGCGGATCATCAA
CCTGGCGCACATTCTGCAGCACTACAATGGGCGGTGCGAGTTCCTTGAGC
TGACCATCGACCTGTTCGTCACCAGCAAGTCGGACAATCGCCAGACGAAG
AGCGGCGAACTAGTGGCCATCCTCAATGGCCTCAAACTCGATATGAGCAA
GCTGCAGATTCAGCCAGTGGCTGGCCAACAGAATGGCAATCCACCCGTCC
AGGCGGTCAATCCGTCGGTGGTCAGTGATGCGGCCGCCGGACGAAGTTGC
ATGATTTACGGTGGAGTACGGGCACGCATGCGACTACGCTCGAGCAGTGG
AAATAGCAACGGCGGAGAGACCCGCTCTCCTCTGCCGAATGGAGGTGGAG
ATCACAGGAGATCTACGCAGGCGCCCCCGGTGTGTGACCAGCACACCAGC
AATCCTAGAATCACATGACCCCCCTGAGAATGGTCAATTGGCAGGGGGGC
GGGCGTGCCCAAAAGTCTCCGATTCCAGCAGA
FMO08146.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(dx)-RF | 3701 | CG4244-RF | 358..1208 | 9..859 | 4015 | 98.4 | Plus |
| Su(dx)-RE | 3520 | CG4244-RE | 177..1027 | 9..859 | 4015 | 98.4 | Plus |
| Su(dx)-RA | 4612 | CG4244-RA | 574..1424 | 9..859 | 4015 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2040421..2040966 | 314..859 | 2440 | 97.3 | Plus |
| 2L | 23513712 | 2L | 2039992..2040154 | 9..171 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 2040217..2040359 | 172..314 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:44 has no hits.
FMO08146.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:07 Download gff for
FMO08146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(dx)-RA | 262..1118 | 1..859 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:40 Download gff for
FMO08146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(dx)-RA | 568..1424 | 1..859 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:04 Download gff for
FMO08146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(dx)-RA | 568..1424 | 1..859 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:04 Download gff for
FMO08146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2039986..2040154 | 1..171 | 97 | -> | Plus |
| 2L | 2040217..2040359 | 172..314 | 100 | -> | Plus |
| 2L | 2040422..2040950 | 315..844 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:40 Download gff for
FMO08146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2039986..2040154 | 1..171 | 97 | -> | Plus |
| arm_2L | 2040217..2040359 | 172..314 | 100 | -> | Plus |
| arm_2L | 2040422..2040950 | 315..844 | 97 | -> | Plus |
