FMO08151.5prime Sequence
1042 bp (958 high quality bases) assembled on 2010-03-10
> FMO08151.5prime
CAGTCGACATGCAATCGGACGCATCTCCCCTGGGAGCTGCTGCCACGGAT
TCCCTAACCATGCATCGCTCAACCTCCATGCCGGTGAAGCCCAAGCCACT
GGAGCAGAAGCCACTGCTCCGTTCCTCCGAAAAGGAGACGGTCAATGCGT
CCGATTACTATCCGGAGAGTCCGGGATTCGTACGGCGCAGAAGGTCAAAA
GCAGCCGGCGATCACCTGGAAACACGCAGCGAGCAAAATTTCCCCTACGC
ACACGACTGGGCGGGCAGTACGATTGAGCTTACTCCAGATTTGGGATCCG
GACCGCGGACTTCCTCCTCCGATGGACTGAGACGCAGCCTTAATCGCGTG
ATGGAAAAGAACGGCAAGGAGAACGTTGTGTTCCGCCGCATTCCGGAGAA
GTCATGGCGCTACATGCGGGATCTGGTCACCACGCTGATGGAACTGGAGT
GGAAGTATATGCTGACCCTGTTCCTGGGCAGCTACTTCCTCAGCTGGCTG
CTCTTCGCCGCCCTCTGCTACGTGGTGGCCTACTCGCACGGTGACTTCAT
CTTCGATCCGGTAAGTGGCAAGCGAATGGGCGAGGGCGTGGATCCCTGCA
TCTACGGGGTGCACAGCTGGGTGGCCATGATCATATACTCTGTGGAAACA
CAGACGACCCTCGGATTCGGCGAAAAATACGCCAGCGAGGAGTGTCCGGA
GACGATCTTCCTGTTCGTCATGCAGATGTTGAGTGCGGCCCTAATCGAGG
GCTGTATGGTGAGCGTGATCTATGCCAAGACCGCACGGCCGGCGAGGCAG
CTGACCAAGCTGAGTTCAGCGATAAGCGGTGATCTGTATCGCGACGGCAG
GCTTGTTTGCTCTCCGCGTCTGTGATCCCGCGAGCAGCAGTCATCGAGTC
CAGATCCGAGTCTACATCATCGTGACAACGCACGCGCGAGGATGAAACTA
TAAAGGCCGTGGAACGAAGTGGAGGGAAAGGGGAGCAGATATTCCTGGTC
GATGTGGGGGCCTGTCATCATGAAACCATCCGCTGTGTCCCT
FMO08151.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk3-RA | 1808 | CG10369-RA | 213..1255 | 8..1028 | 4555 | 97.1 | Plus |
| Irk3-RD | 1820 | CG10369-RD | 213..1267 | 8..1028 | 4425 | 96 | Plus |
| Irk3-RC | 918 | CG10369-RC | 213..642 | 8..437 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18712195..18712589 | 826..433 | 1910 | 99.5 | Minus |
| 2L | 23513712 | 2L | 18713306..18713536 | 238..8 | 1155 | 100 | Minus |
| 2L | 23513712 | 2L | 18712952..18713150 | 437..239 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 18712012..18712104 | 924..837 | 200 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:35 has no hits.
FMO08151.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:47 Download gff for
FMO08151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 223..1198 | 1..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:12 Download gff for
FMO08151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 208..1183 | 1..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:48 Download gff for
FMO08151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 208..1183 | 1..965 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:48 Download gff for
FMO08151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18713306..18713540 | 1..238 | 98 | | Minus |
| 2L | 18712189..18712584 | 438..831 | 99 | <- | Minus |
| 2L | 18712952..18713150 | 239..437 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:12 Download gff for
FMO08151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18712189..18712584 | 438..831 | 99 | <- | Minus |
| arm_2L | 18712952..18713150 | 239..437 | 100 | <- | Minus |
| arm_2L | 18713306..18713540 | 1..238 | 98 | | Minus |
