FMO08152.5prime Sequence
1154 bp (1023 high quality bases) assembled on 2010-03-10
> FMO08152.5prime
CAGTCGACATGTCTTCGAATAACCAGAGCAGCAGCGTTGCCCAGGCGGCA
ACAAGTGCCCGCACCGTCAGTGCCGGATCGGCGGAAGCCACAGATGCCAA
TAGTACCGCCTCGAACAACAACAATAATAGCAGCAGTACCGCTGCAGCGG
GCAACAACAGCGACAACAGCAGTCCCACCACTGGAACGGGCACAGGAGCG
AGCACTGGAAAGCTGCACGGCGGCCACACGGCAGTAAACACCAAGGAACG
GGTGGTGGACAGCGTTCCCTTCCCGCCCAGCCACAAGCTGACCTTGGCGG
AGGTGTTCGACCAACGCACCGGCAAGCCCAACCATGAGCTGCTCAAGCAG
CACTTCATTCTTGAGGGCAGAATCGAGGAGGCGCCCGCCCTGAAAATCAT
CCAGGACGGAGCCGCCCTGCTGCGTCAGGAGAAGACGATGATCGATATTG
AGGCGCCGGTGACGGTGTGCGGTGATATCCACGGCCAGTTCTACGACCTG
ATGAAGCTGTTCGAAGTGGGCGGCTCGCCCGCGAGCACCAAGTATCTGTT
CCTGGGCGACTACGTCGATCGGGGCTACTTCAGCATCGAGTGCGTCCTGT
ATTTGTGGTCGCTAAAGATCACCTATCCGCAGACGCTGTTCCTGCTGCGC
GGCAACCACGAGTGCCGGCACTTAACCGAGTACTTCACCTTCAAGCAGGA
GTGCAAGATCAAGTACTCGGAGCGCGTGTACGACGCCTGCATGGACGCAT
TCGACTGCCTGCCGCTGGCGGCGCTAATGAACCAGCAGTTCCTCTGCGTG
CACGGCGGTCTGTCGCCGGAGATACACGAGCTGGAGGACATCCGGCGGCT
CGACCGCTTCAAGGAGCCGCCCGCCTTTGGCCCATGTGCGACCTGCTGTG
GTCCGATCCCCTGGAGGACTTTGGCAACGAGAGACTCGGACTTCTACACG
CACACTCCGTGCGCGGATGCTCGTACTTCTACAGCTACGCCGCCTGCTGC
GACTTCCTGCAGAACAACACTGCTGTCGATCATCCGGGGCACGAGGGCAG
ACTCGGCTACGCATGTACGCAAAGCAACCACCGGCTTCCCTCCTGATCCA
TCTTCTCGTGCCACTATTCGACGTACAACACAAGGCGCGGTGGTGATTCA
GAAA
FMO08152.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp2B-14D-RB | 4551 | CG9842-RB | 609..1774 | 8..1146 | 5150 | 97.4 | Plus |
Pp2B-14D-RC | 5390 | CG9842-RC | 609..1774 | 8..1146 | 5150 | 97.4 | Plus |
Pp2B-14D-RA | 3253 | CG9842-RA | 609..1774 | 8..1146 | 5150 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16558372..16559408 | 1038..8 | 4940 | 99.3 | Minus |
X | 23542271 | X | 16566971..16567772 | 1038..243 | 2730 | 90.5 | Minus |
3R | 32079331 | 3R | 31041633..31041875 | 348..590 | 435 | 78.6 | Plus |
3R | 32079331 | 3R | 31042512..31042655 | 879..1019 | 305 | 84 | Plus |
3R | 32079331 | 3R | 31042283..31042398 | 708..823 | 295 | 83.6 | Plus |
X | 23542271 | X | 20422643..20422713 | 524..454 | 205 | 85.9 | Minus |
3R | 32079331 | 3R | 31041962..31042080 | 589..707 | 205 | 78.2 | Plus |
2L | 23513712 | 2L | 7830510..7830633 | 456..579 | 200 | 77.4 | Plus |
Blast to na_te.dros performed 2014-11-28 22:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6918 | 21..180 | 148 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1499..1588 | 85..174 | 142 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6868 | 12..181 | 141 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2509 | 16..204 | 139 | 57.9 | Plus |
FMO08152.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:49 Download gff for
FMO08152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp2B-14D-RA | 606..1733 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:06 Download gff for
FMO08152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp2B-14D-RA | 610..1737 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:56 Download gff for
FMO08152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp2B-14D-RA | 603..1730 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:56 Download gff for
FMO08152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16558287..16559412 | 1..1111 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:06 Download gff for
FMO08152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16452320..16453445 | 1..1111 | 97 | | Minus |