Clone FMO08152 Report

Search the DGRC for FMO08152

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:81
Well:52
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPp2B-14D-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08152.5prime Sequence

1154 bp (1023 high quality bases) assembled on 2010-03-10

> FMO08152.5prime
CAGTCGACATGTCTTCGAATAACCAGAGCAGCAGCGTTGCCCAGGCGGCA
ACAAGTGCCCGCACCGTCAGTGCCGGATCGGCGGAAGCCACAGATGCCAA
TAGTACCGCCTCGAACAACAACAATAATAGCAGCAGTACCGCTGCAGCGG
GCAACAACAGCGACAACAGCAGTCCCACCACTGGAACGGGCACAGGAGCG
AGCACTGGAAAGCTGCACGGCGGCCACACGGCAGTAAACACCAAGGAACG
GGTGGTGGACAGCGTTCCCTTCCCGCCCAGCCACAAGCTGACCTTGGCGG
AGGTGTTCGACCAACGCACCGGCAAGCCCAACCATGAGCTGCTCAAGCAG
CACTTCATTCTTGAGGGCAGAATCGAGGAGGCGCCCGCCCTGAAAATCAT
CCAGGACGGAGCCGCCCTGCTGCGTCAGGAGAAGACGATGATCGATATTG
AGGCGCCGGTGACGGTGTGCGGTGATATCCACGGCCAGTTCTACGACCTG
ATGAAGCTGTTCGAAGTGGGCGGCTCGCCCGCGAGCACCAAGTATCTGTT
CCTGGGCGACTACGTCGATCGGGGCTACTTCAGCATCGAGTGCGTCCTGT
ATTTGTGGTCGCTAAAGATCACCTATCCGCAGACGCTGTTCCTGCTGCGC
GGCAACCACGAGTGCCGGCACTTAACCGAGTACTTCACCTTCAAGCAGGA
GTGCAAGATCAAGTACTCGGAGCGCGTGTACGACGCCTGCATGGACGCAT
TCGACTGCCTGCCGCTGGCGGCGCTAATGAACCAGCAGTTCCTCTGCGTG
CACGGCGGTCTGTCGCCGGAGATACACGAGCTGGAGGACATCCGGCGGCT
CGACCGCTTCAAGGAGCCGCCCGCCTTTGGCCCATGTGCGACCTGCTGTG
GTCCGATCCCCTGGAGGACTTTGGCAACGAGAGACTCGGACTTCTACACG
CACACTCCGTGCGCGGATGCTCGTACTTCTACAGCTACGCCGCCTGCTGC
GACTTCCTGCAGAACAACACTGCTGTCGATCATCCGGGGCACGAGGGCAG
ACTCGGCTACGCATGTACGCAAAGCAACCACCGGCTTCCCTCCTGATCCA
TCTTCTCGTGCCACTATTCGACGTACAACACAAGGCGCGGTGGTGATTCA
GAAA

FMO08152.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pp2B-14D-RB 4551 CG9842-RB 609..1774 8..1146 5150 97.4 Plus
Pp2B-14D-RC 5390 CG9842-RC 609..1774 8..1146 5150 97.4 Plus
Pp2B-14D-RA 3253 CG9842-RA 609..1774 8..1146 5150 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16558372..16559408 1038..8 4940 99.3 Minus
X 23542271 X 16566971..16567772 1038..243 2730 90.5 Minus
3R 32079331 3R 31041633..31041875 348..590 435 78.6 Plus
3R 32079331 3R 31042512..31042655 879..1019 305 84 Plus
3R 32079331 3R 31042283..31042398 708..823 295 83.6 Plus
X 23542271 X 20422643..20422713 524..454 205 85.9 Minus
3R 32079331 3R 31041962..31042080 589..707 205 78.2 Plus
2L 23513712 2L 7830510..7830633 456..579 200 77.4 Plus
Blast to na_te.dros performed 2014-11-28 22:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6918 21..180 148 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1499..1588 85..174 142 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6709..6868 12..181 141 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2509 16..204 139 57.9 Plus

FMO08152.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:49 Download gff for FMO08152.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp2B-14D-RA 606..1733 1..1111 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:06 Download gff for FMO08152.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp2B-14D-RA 610..1737 1..1111 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:56 Download gff for FMO08152.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp2B-14D-RA 603..1730 1..1111 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:56 Download gff for FMO08152.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16558287..16559412 1..1111 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:06 Download gff for FMO08152.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16452320..16453445 1..1111 97   Minus