FMO08156.5prime Sequence
471 bp (373 high quality bases) assembled on 2010-03-10
> FMO08156.5prime
CAGTCGACATGTTTCTGGCCAAGAGCATAGTGTGCCTCTCCCTCCTGGCG
GTGGCCAATGCCCAATTCGACACCAACTACGCATCCGGTCGTAGTGGAAT
GGTCCACCTCTTCGAGTGGAAGTGGGACGACATCGCTGCCGAGTGCGAGA
ACTTCCTGGGACCCAATGGCTACGCCGGTGTTCAGGTCTCCCCTGTGAAC
GAGAACGCCGTCAAGGACAGCCGCCCCTGGTGGGAACGTTACCAACCCAT
CTCCTACAAGCTGGAGACCCGCTCCGGAAACGAGGAGCAGTTCGCCAGCA
TGGTCAAGCGCTGCAACGCCGTCGGAGTGCGCACCTACGTGGACGTGTCT
TCAACCACATGGCCGCCGACGGAGCACCTACGGCACTGGCGGCACACCGC
CAGCCCCAGCACAAGAACTATCCGGAGTGCCTATTCTCGTGGACTTCAAC
CGACTGGGCCATCAGAATAAA
FMO08156.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amy-d-RA | 1606 | CG17876-RA | 36..503 | 8..465 | 2045 | 97.2 | Plus |
| Amy-p-RB | 1668 | CG18730-RB | 33..500 | 8..465 | 1970 | 96.2 | Plus |
| Amy-p-RA | 1595 | CG18730-RA | 33..500 | 8..465 | 1970 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17124799..17125205 | 8..411 | 1885 | 99.3 | Plus |
| 2R | 25286936 | 2R | 17119865..17120271 | 411..8 | 1810 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:30 has no hits.
FMO08156.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:50 Download gff for
FMO08156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-d-RA | 31..507 | 1..468 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:07 Download gff for
FMO08156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-d-RA | 31..507 | 1..468 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:29 Download gff for
FMO08156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-d-RA | 29..505 | 1..468 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:29 Download gff for
FMO08156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17124792..17125268 | 1..468 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:07 Download gff for
FMO08156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13012297..13012773 | 1..468 | 96 | | Plus |
