FMO08159.5prime Sequence
1091 bp (870 high quality bases) assembled on 2010-03-10
> FMO08159.5prime
CAGTCGACATGATGCAAACCCTGAAACCACCGCCACCGCTACATCATCAC
CACCAGCATCAGCACCAGCTCCAGCATCCGCCTCAGCAGCAGCCACATCC
GCATCAGCAGCTGCAACATCCGTTGCAGCAGCAACAGCACCTGTCAGCCA
TGGATAATCACCAGCAACATCAGCCGCATATCCATCAGCAGCAGCAGCAG
CAGCAACAATTGCCACCCACGCCGCAGGCATCTCACCTGGTCGGTGGGCA
GCAACAGCAGCAGCAACATCCGCACCACAATCACCTGGCTGTCGACCAGG
ATGACCCAAATCCCGAACTGGTGCTCGCCTTAATTTCCAGGAACCGGGCG
CTCGAGGCCACAATCCCGAAATGCGGCGGCTGCCACGAGCTGATCCTTGA
CCGCTTCATCCTCAAAGTGCTGGAGAGGACGTGGCACGCCAAGTGCCTGC
AGTGCAGCGAGTGTCATGGCCAGCTGAACGACAAGTGCTTCGCGCGGAAT
GGCCAGCTCTTCTGCAAGGAGGACTTCTTCAAGCGTTACGGTACAAAGTG
TTCCGCTTGTGATATGGGCATTCCGCCCACGCAGGTGGTGCGTCGGGCGC
AGGACAACGTCTACCATCTGCAGTGCTTCCTGTGCGCCATGTGCTCCCGC
ACCCTGAACACCGGCGACGAGTTCTACCTGATGGAGGATCGTAAGCTGAT
CTGCAAGCGGGACTACGAGGAGGCCAAGGCCAAGGGCCTCTATCTGGATG
GCTCGTTGGACGGCGATCAGCCGAGTAAGCGTCCGCGCACCACGATCACC
GCCAAGCAGCTGGAGACCCTGAAAACGGCCTACATAACAGCCCCAAACCC
GCCCGCCATGTACGTGAGCAGCTTTCGCAGGACACGGGCTGACATGCGGG
TGGTGCATGTCTGCTTCAGACCAGGGGCTAAGGAGAGCGTCTGAAATGGA
TGCGGACGCACGCGCTGGAGCCAGTACTTCAGCTCGATGACGGCAACTGC
TCGCCGCGCACGACAATTCCTCAAAAGGATGAACTGAAGGTGACTACGAC
CGCTTCATTCACCACGATCTGACAACGACGGCTACGCTACG
FMO08159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lim3-RG | 2712 | CG10699-RG | 205..1296 | 9..1085 | 4870 | 97.3 | Plus |
| Lim3-RF | 3643 | CG10699-RF | 1136..2227 | 9..1085 | 4870 | 97.3 | Plus |
| Lim3-RD | 2712 | CG10699-RD | 205..1296 | 9..1085 | 4870 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19105723..19106071 | 357..9 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 19081491..19081693 | 736..534 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 19081819..19081995 | 533..357 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 19081238..19081423 | 917..735 | 755 | 96.2 | Minus |
| 2L | 23513712 | 2L | 19081015..19081129 | 1066..957 | 235 | 90.4 | Minus |
Blast to na_te.dros performed 2014-11-28 21:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2277..2548 | 14..289 | 405 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6944 | 36..258 | 379 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6923 | 30..213 | 379 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6927 | 64..277 | 342 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2629 | 30..283 | 328 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6900 | 85..274 | 326 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6952 | 21..203 | 276 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2398..2664 | 25..285 | 275 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2665 | 14..274 | 271 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6927 | 78..316 | 269 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2739..2999 | 15..272 | 262 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2523 | 68..285 | 257 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2732..2961 | 47..284 | 243 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2475 | 103..285 | 238 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2722..2919 | 71..270 | 237 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6958 | 15..179 | 224 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6869 | 157..285 | 204 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6839 | 147..285 | 203 | 64 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1144 | 48..143 | 197 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2436 | 157..282 | 195 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1163 | 55..174 | 176 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2825 | 52..287 | 169 | 58.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1181 | 80..211 | 168 | 62.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3379 | 63..209 | 161 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2798 | 85..287 | 159 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2417 | 183..287 | 154 | 63 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9066..9203 | 132..276 | 149 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1575 | 84..141 | 146 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1056..1151 | 181..270 | 142 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1593 | 65..150 | 141 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6764 | 56..285 | 140 | 53 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2397 | 191..285 | 134 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2664 | 101..174 | 131 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6806 | 177..285 | 126 | 62.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9183..9226 | 157..200 | 121 | 75 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9375..9442 | 133..202 | 120 | 65.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7931..7998 | 133..202 | 120 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2385 | 248..285 | 118 | 78.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1133 | 248..285 | 118 | 78.9 | Plus |
FMO08159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:44 Download gff for
FMO08159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim3-RB | 162..1263 | 1..1091 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:10 Download gff for
FMO08159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim3-RD | 200..1301 | 1..1091 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:00 Download gff for
FMO08159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim3-RD | 200..1301 | 1..1091 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:00 Download gff for
FMO08159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19081230..19081422 | 736..924 | 95 | <- | Minus |
| 2L | 19081492..19081694 | 533..735 | 99 | <- | Minus |
| 2L | 19081820..19081994 | 358..532 | 100 | <- | Minus |
| 2L | 19105723..19106076 | 1..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:10 Download gff for
FMO08159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19081230..19081422 | 736..924 | 95 | <- | Minus |
| arm_2L | 19081492..19081694 | 533..735 | 99 | <- | Minus |
| arm_2L | 19081820..19081994 | 358..532 | 100 | <- | Minus |
| arm_2L | 19105723..19106076 | 1..357 | 99 | | Minus |
