FMO08162.5prime Sequence
1105 bp (1007 high quality bases) assembled on 2010-03-10
> FMO08162.5prime
CAGTCGACATGGATGATGGAGGGGAGTTGAGCTTGGTGAAGAAAGTTGTC
CACTCGCTGGTGGTGTCCTCACCAGGAAAACTGACCGTTGAGCAGTTGAT
GCGGGATTACCGCAGCGAAGAGGGCTGCACTTTGCCCTACAGCAAACTGG
GATTTAAGGACGCCGAATCCTTTCTCCGATCCATTCCGGATACGGTTACG
GTGACGGGCCACGGACAAATGGCATGGATAACTGCAGTAGCCACTGCCAA
ATCGGCGCACATTCAGAAATTGGTCCGTTGCCAAAAGAAGTCCAAGAATC
GAGGCTCCCACAAACCCAAGTATTGCTACGCCTCCGAGCCATCCAATCTG
GTCTTCATTAACGAAAGCGTCTCTAAAATGAAAAACAGAAAAGCGCCGTT
CCCAACTTATCAGGTGCCCAGAAATCTGAAACTTCCTGTATCATATCCCA
ACTATAATCGACTGTTATATCCCGTCCATACGCCTCATATTGACCAAATG
ATCAGCACCGGACAGCAACAGAGTACCCTTAGAACCCAAAGGCCAAGCTT
TCCATGTAACGCCAACTCCAAGTCATTGAAAGTTAATGATTGGTCGCAGA
AAGACCGAAAACAGGAACCCTCAAAGGAGCGAAACAATCAGAAATATCCT
AAAATAACTACTGAGAATAAGCAAGAGAAAGAAACCGAGGAATTGGCCCA
AGCTTTTGAAAACCTTTCCGTGGATGTTGCTCCCACTGATCACCAAGAAA
AGCTAAAGTGCGAAATATATGAGGATAATGAGGACGAATTCGTGAGAGAC
CCCTTTATCTATGGAGAGGTTAAAGAGAAAGAAGATGAAGCGGTGGTGCT
CGCATTTGACGCCGTTTCCGAGGATGGTTTTGATCTCTATCGATGACCAC
AACTCAGCAGATGCTGTCAAGCCCCTGGATCCGTCGGAGGATGCTTACAC
TACGCGTCTCTGACGATGGGGATGATGAAATGCCATTCCAGCTTATGCTG
TGGACATCGAGTCTGGACGTGACTACCCTAGGGATGCGATCGTCTGCTTT
CAACTGCTGCTCGCGATATTGATCCATTATCGAATTACGCGACGCATAGG
TGCAG
FMO08162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tej-RA | 1942 | CG8589-RA | 108..1201 | 8..1088 | 5085 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14301119..14301608 | 1003..519 | 2155 | 98.4 | Minus |
| 2R | 25286936 | 2R | 14301675..14301996 | 521..200 | 1610 | 100 | Minus |
| 2R | 25286936 | 2R | 14302052..14302246 | 202..8 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:15:42 has no hits.
FMO08162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:53 Download gff for
FMO08162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8589-RA | 101..1221 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:27 Download gff for
FMO08162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tej-RA | 101..1221 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:02 Download gff for
FMO08162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tej-RA | 101..1221 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:02 Download gff for
FMO08162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14302054..14302249 | 1..200 | 98 | | Minus |
| 2R | 14301120..14301605 | 522..1002 | 98 | <- | Minus |
| 2R | 14301675..14301995 | 201..521 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:27 Download gff for
FMO08162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10188625..10189110 | 522..1002 | 98 | <- | Minus |
| arm_2R | 10189180..10189500 | 201..521 | 100 | <- | Minus |
| arm_2R | 10189559..10189754 | 1..200 | 98 | | Minus |
