FMO08163.5prime Sequence
1123 bp (1032 high quality bases) assembled on 2010-03-10
> FMO08163.5prime
CAGTCGACATGAGCGAGCCTGACCCGCAGGAACTGGGAGCTGAGGTGGTC
AGCGGATTGGTGGCGACCAGCGACGACCGCCTGGAGATGATCAACGCCGA
GTACACGAACCTATGCCGGGATCTAAACATGGATCGGCAGACAGAGCTGC
AGGGCTACGAGACGTACTTAGAGGTGTCCCAGAGGTGCTCCATGGAGGGC
ACAGCCAGCCACTGGATGTGCTGCGCCATTTACACGGCCTGCCGAAGAAC
CAGCACACCCACGGTGACTGGCCAGAATGCAGTGGTCAAGGGTAATTGTG
TGTCCTTAAACAATTTGCTGCGCTGCTGCAAGATGAGCATCTACGAGTTC
AAGACCAAAATTAAGCAGTGGTGCGACATGGCCAACCTGCCTCAGGAGTT
TGTCAACGAGATTGAGGATCTGGACCGCAAGTTCAGCATTACATTCATGC
TGCACAAGCGTTTCCGCATTATTATGGACATGATCTTCTCGTGCCCGCCC
AACGAGAAGAAGCACTCCAAGTACATTTCTCTGCATGGCAACCACGCCCA
CGGAAAGTGCTCGTACATCAAGCTGGACGACATCTGCTGGCGCCTGTTTC
TCTGCGCCAAGAACCAGAAGCCGAGCAACACCGTGGACCTGGTGACATCC
TACAATCTGATGATTTGCTGCATAGACCTGATATACAACAATGTGCTGGC
CGAGAAGCGCACCGATCTCATCAACCCCAAATTCGAGGGCCTGCCGAGCA
ACTGGACGGAGCTGGACTTTCGTCACAATCCGCACTGCATTTTGTCCAAC
TTCTGTGACATGACCGAGGAGGCTAAAGCCATGAAGGCCACCACTTTCCG
CCAGATCATGTCGAGCTTCTTTCAGGCTTCGACCATCTACGGCAACAAGG
ACACTATGTTAGGCCTATTGGCTAACGAAAACTTCGAGCGCAACCTAAAG
TCCCTCAACATCAGCTACGAGCAGTACGTCCTCAGCGTCGGCGAATTCGA
CGAACGCATTCTGAGTGCTACGAATGCGGGGAACACACTGCCCTCACGAA
CAGTTCCTGCGTCCGCGGTTCTCCGCTTACCGCAAGCAGATCTGCTGGCG
CACCCGCGATGGCTGGGATAATT
FMO08163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf-RA | 3619 | CG7413-RA | 692..1815 | 6..1121 | 5315 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 799711..800069 | 881..523 | 1780 | 99.7 | Minus |
| X | 23542271 | X | 800596..800788 | 198..6 | 965 | 100 | Minus |
| X | 23542271 | X | 800128..800318 | 526..336 | 955 | 100 | Minus |
| X | 23542271 | X | 799461..799648 | 1066..881 | 750 | 95.7 | Minus |
| X | 23542271 | X | 800378..800519 | 337..196 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:16 has no hits.
FMO08163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:54 Download gff for
FMO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 666..1795 | 1..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:54 Download gff for
FMO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 688..1817 | 1..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:23 Download gff for
FMO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 688..1817 | 1..1123 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:23 Download gff for
FMO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 800597..800790 | 1..197 | 98 | | Minus |
| X | 799397..799647 | 882..1123 | 94 | <- | Minus |
| X | 799711..800065 | 527..881 | 100 | <- | Minus |
| X | 800128..800316 | 338..526 | 100 | <- | Minus |
| X | 800378..800517 | 198..337 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:54 Download gff for
FMO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 693430..693680 | 882..1123 | 94 | <- | Minus |
| arm_X | 693744..694098 | 527..881 | 100 | <- | Minus |
| arm_X | 694161..694349 | 338..526 | 100 | <- | Minus |
| arm_X | 694411..694550 | 198..337 | 100 | <- | Minus |
| arm_X | 694630..694823 | 1..197 | 98 | | Minus |
