FMO08164.5prime Sequence
1123 bp (1031 high quality bases) assembled on 2010-03-10
> FMO08164.5prime
CAGTCGACATGCCAAGTGAAATAATTACTTTGCAGCTTGGGCAGTGCGGC
AATCAAATTGGCTTTGAGTTCTGGAAAAGATTGTGCCTGGAGCATGGCAT
CTCCCCTAGCGGCGTGCTGGAGGACTTTGCCAATGATGGCTTGGACCGCA
AGGATGTGTTCTTCTACCAGGCGGACGACGACCACTACATACCCCGCGCG
GTGCTCTTGGACTTGGAACCGAGGGTGATCAATACCATAATGGGCTCGGT
CTACTCCAAGCTCTACAATCCGGAAAATGTGTACCTATCCAAGCACGGAG
GCGGTGCGGGCAACAACTGGGCCTCAGGCTATAGCCAGGGCGAAAAGCTG
CAAGAAGAGGTATTCGACATCATTGACCGTGAGGCAGATGGAAGCGATTC
GTTGGAGGGCTTTATACTTTGCCATTCGATTGCTGGCGGAACGGGATCGG
GAATGGGCTCCTTTATCATGGAGCGCCTGGCGGACCGCTATCCCAAGAAA
CTTATCCAAACATTCAGTGTGTTTCCCAATCAGGACGAGATCAGTGATGT
AGTGGTGCAGCCATACAACTCCATGCTCACCCTGAAACGTTTGACTACGG
CTGCGGACAGTGTGGTTGTCCTGGACAACACTGCTCTTAATCGTATTGCC
TGCGATCGCTTGCACATTCAGAATCCCAGCTTTTCGCAGATCAACAACCT
GGTCTCCACCATAATGAGCGTCAGCACCACTACGCTGAGGTATCCATCCT
ACATGAACAACAATCTCATTGGGCTGACGGCTCCTTTAATCCCGACGCCC
CAGCTGCATTTTCTCATGACAGGCTACACGCCGCTGACTAGCGATTCGGA
TATCCATACCCAGCAGCTGGTTAATGTGCGAAAGACTACTGTTCTAGATG
TAATGCGGCGTCTGTTGCAGCCCAAGAACATGATGGTGTCCACTGGTCCC
GACAAGTCAAATCATCACTGCTACATCTCATTCTAAACATTATCCAGGGC
GAGGTGATTCCACTCAAGTGCACAGGTCCTGCAGCGCATCGCGACGGCAG
ATGGCCAGTCATTCCTGGGTCTCACCTCTATCCAGGTAGCGTTTCCGTCA
TCGCCCTACGTGAGAGCAACATC
FMO08164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub23C-RA | 1850 | CG3157-RA | 169..1293 | 9..1120 | 5210 | 98.3 | Plus |
| gammaTub37C-RB | 1628 | CG17566-RB | 102..1097 | 37..1040 | 1530 | 78 | Plus |
| gammaTub37C-RA | 1521 | CG17566-RA | 102..1097 | 37..1040 | 1530 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2973427..2974211 | 259..1040 | 3745 | 99.4 | Plus |
| 2L | 23513712 | 2L | 19184649..19185220 | 835..264 | 1045 | 78.8 | Minus |
| 2L | 23513712 | 2L | 2973166..2973368 | 58..260 | 1015 | 100 | Plus |
| 2L | 23513712 | 2L | 19185350..19185534 | 242..58 | 400 | 81.1 | Minus |
| 2L | 23513712 | 2L | 2973059..2973107 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:34 has no hits.
FMO08164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:55 Download gff for
FMO08164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub23C-RA | 159..1296 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:25 Download gff for
FMO08164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub23C-RA | 160..1297 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:13 Download gff for
FMO08164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub23C-RA | 160..1297 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:13 Download gff for
FMO08164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2973050..2973107 | 1..57 | 93 | -> | Plus |
| 2L | 2973166..2973368 | 58..260 | 100 | -> | Plus |
| 2L | 2973429..2974305 | 261..1123 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:25 Download gff for
FMO08164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2973050..2973107 | 1..57 | 93 | -> | Plus |
| arm_2L | 2973166..2973368 | 58..260 | 100 | -> | Plus |
| arm_2L | 2973429..2974305 | 261..1123 | 97 | | Plus |
