FMO08165.5prime Sequence
1127 bp (1029 high quality bases) assembled on 2010-03-10
> FMO08165.5prime
CAGTCGACATGCAGAGCAGTGCCGGCGGAGCGTCGGGGGGCAGCAACTAC
GAGGACGTGGCCGCCGCCCGCCGAGGACGCTTCCGTGTCACCTCCTCCAC
GCCACAGGGCCCGCCCGAAACGACGCTCGGCCGCTTTCGTCTCATGCCCA
CGTCTAATTATGGCGCCATTTCGCCAATCCTCCAGCGGGGTCGCTTCGCC
GTGATTCCCGAAGAGCCCCAAGCCGGTTCCCCCGCATTGGGAACGCCTCC
GCCGGGCGGCCGAACAGCGCGTTCTCCATCGCCCGAATGGGACTTCGACA
TCGAGCAGGAGCAGGATGGCAGCCTCGGAGGAGCCGGCCGGATGCCAGGA
TCACGACCCTCCAGCGCTCCCGCAGAGCCAAATGCCAAGGCGGCCAAGAA
GGCCTACAAAAAGATGGAAAAGGAGCAGCGTCGCCAGGAGAAGGAGCAGT
CGCGACGGGAAAAGGAGGCCCGCAAGCTGGAGCGCGAGACGGCGAGAAGG
AACGAACGCGAGGCGGCCAAGCTGGAGAAGATCAACAGGCACAGCGAGAA
GATCTCACGCAGCACGGAGCGAATGGCCATGGCCGGTGTGGGATCGCGGT
CCGGTTCGCTGGAGCGGAGGCGAAGCGGCGAGGACTCGCCCGTGCTCAAT
CAGTCGACGGTGCACGGTATAGCGTCACCCAACCGAAGGCCAACGATATT
CGACGTTTTCCGACCGCGTGCGAAATCCGATGCGAAGCGGCAGAAGGAGA
AGCATCTGCTGGATCCCTCGTCCGCCGACAGCAGCGCCACCAGCAGCACC
TACTCCGTTTCCGGCGGCACAGGCCCGGCCACGAGCTCGGCAGCAGGTGG
AGCAGGAGGAGCGGCGGCAGCAGCAGGACAGGGCGCAGCGGGAGGAGCCG
GTGGCCTTATGACTCCATGAAGGTGGCCATGCAGAACTTTAGCCATCGCC
AGCATCCCGCCGTGACGATACGAGCGCCGACGGCACGCAATCAACGGCAA
GAGCAGGTACAAGACGGCAGTGCCCATCCGCCATCAAGGCAGCGACGCGC
AGAATTACCACACGGGTGACGGCCGGGGGCGTCCAATCTTCCCACGGTCG
CCGATGAACCAAGTCATGATCTGTTCC
FMO08165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RA | 3614 | CG17299-RA | 611..1733 | 9..1127 | 5265 | 98.5 | Plus |
| SNF4Agamma-RB | 3348 | CG17299-RB | 440..1562 | 9..1127 | 5265 | 98.5 | Plus |
| SNF4Agamma-RF | 4769 | CG17299-RF | 2066..2888 | 309..1127 | 3765 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21178579..21179204 | 430..1052 | 2870 | 99 | Plus |
| 3R | 32079331 | 3R | 21155233..21155388 | 154..309 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 21154927..21155075 | 9..157 | 730 | 99.3 | Plus |
| 3R | 32079331 | 3R | 21178275..21178399 | 306..430 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:40:53 has no hits.
FMO08165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:56 Download gff for
FMO08165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 436..1562 | 1..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:28 Download gff for
FMO08165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 436..1562 | 1..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:44 Download gff for
FMO08165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RB | 436..1562 | 1..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:44 Download gff for
FMO08165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21155233..21155387 | 154..308 | 100 | -> | Plus |
| 3R | 21178278..21178399 | 309..430 | 100 | -> | Plus |
| 3R | 21154923..21155071 | 1..153 | 97 | -> | Plus |
| 3R | 21178580..21179204 | 431..1052 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:28 Download gff for
FMO08165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16980645..16980793 | 1..153 | 97 | -> | Plus |
| arm_3R | 16980955..16981109 | 154..308 | 100 | -> | Plus |
| arm_3R | 17004000..17004121 | 309..430 | 100 | -> | Plus |
| arm_3R | 17004302..17004926 | 431..1052 | 99 | -> | Plus |
