Clone FMO08170 Report

Search the DGRC for FMO08170

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:81
Well:70
Vector:pMK33-CFH-BD
Associated Gene/Transcriptmib1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08170.5prime Sequence

206 bp (206 high quality bases) assembled on 2010-03-10

> FMO08170.5prime
CAGTCGACATGTCTTGTGCGGCCACCCTCTCGTCGGCCAAGGACTCCACC
AATGCAAATGCCAGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGCACC
GACAAACAGCAATACCAACACTAACACCAACACACAGTCCACAGCTGTGG
GTGTGGTAGTGAGCAGTGCAGCAGGCACAGGTGTTGGTGTTGGTGGGGGA
GGAGGT

FMO08170.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
mib1-RA 4026 CG5841-RA 165..362 9..206 990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16011451..16011648 206..9 990 100 Minus
Blast to na_te.dros performed 2014-11-28 21:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 4709..4755 15..61 100 68.1 Plus

FMO08170.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:51 Download gff for FMO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
mib1-RA 160..362 3..206 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:23 Download gff for FMO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
mib1-RA 160..362 3..206 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:28 Download gff for FMO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
mib1-RA 160..362 3..206 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:28 Download gff for FMO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16011451..16011653 3..206 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:23 Download gff for FMO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16004551..16004753 3..206 98   Minus