FMO08171.5prime Sequence
972 bp (779 high quality bases) assembled on 2010-03-10
> FMO08171.5prime
CAGTCGACATGAGCAGACGACGGGCAATTACCATGTCGTTGGCTCCCCAT
CTTGGCCAGGCTTTTAGCCTCTGCCTGTGCCTGTGCCTGTGCCTGGTTTT
GGCCACATTGCCAGTGGCCCTGGGATTGGCCAACTGCCCGAATGGCTGCG
AGTGCGACGACGACACCCTGATGGTCAATTGCGGCGAGGGCACGCTGGAC
GTCCTGCCCATCGCCCTGAATCCCGCCATCCAGCGACTGGTGATCAAGAA
CAACAAACTGAAGACCATCGACTCATCCATGCAGTTCTATGCGCAGCTCA
CTTTCCTTGATCTGTCATTCAATGACATGCTCACCATACCGGAACGATCG
TTTGCGTATCACGCCAAATTGCAGGAGCTGCATCTGGACCACAATAAGAT
TGGCCAGGTGTCGAACAAGACCTTCCTCGGACTGTCGACCATCAGTGTTT
TAAATCTGAGAGGCAACTTGATTGCCGAACTAGAGTACCGCACTTTTTCG
CCTATGGTCAAGCTCGCTGAGCTTAATCTCGGCCAGAATTCGCATCAGCC
ACATCGATCCACATGCCCTGGATGGCTTGGACAACCTGAGGGTGCTCTAT
CTGGATGATAATACACTGACCACAGTGTCGGGGAGAACTAACCTTTCCAG
GCACTCCACTCCCTGGCAGAGCTATACTTGGGCACCTATTCCTTTATGAC
AATTCCCGGAGGAGCTTTTCATGGATCTCAAAGGATTTACCAGATTGGAT
CTGCGCGGAGCTGGCTTGCCAACATCTCGGGAGATGCTCTCAAGGGCTGG
GTGTCCCTTTCGCTTTTTGGATCTTCCGATATCCTCCTCCCTGCGAAACC
CACAACAGCCTTTTCATGGATTGGGACCCCGGGAACAGCTAATCCTTTGG
CCCAAATGGATTTTAAGGTGTTTTCCCCCTGGCGCCTTTTCGGTGTTTCG
GAAGTGTGAAGAATTGAAAATG
FMO08171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caps-RE | 4841 | CG11282-RE | 888..1815 | 9..943 | 4005 | 96.1 | Plus |
| caps-RD | 4841 | CG11282-RD | 888..1815 | 9..943 | 4005 | 96.1 | Plus |
| caps-RB | 4628 | CG11282-RB | 675..1602 | 9..943 | 4005 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13275689..13276568 | 9..892 | 3775 | 97.2 | Plus |
| 3L | 28110227 | 3L | 13115372..13115687 | 122..437 | 530 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:17:44 has no hits.
FMO08171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:21 Download gff for
FMO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caps-RB | 672..1620 | 1..959 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:59 Download gff for
FMO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caps-RA | 882..1830 | 1..959 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:10 Download gff for
FMO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caps-RB | 669..1617 | 1..959 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:10 Download gff for
FMO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13275683..13276631 | 1..959 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:59 Download gff for
FMO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13268783..13269731 | 1..959 | 95 | | Plus |
