FMO08172.5prime Sequence
779 bp (620 high quality bases) assembled on 2010-03-10
> FMO08172.5prime
CAGTCGACATGGCCGCGACCTCGTACATGACGCCGCCGAGCGGTGATCTG
GACATGGCCCTCGGAGGCGGTGGCTATCACACCTCGTCGCCGCGCTCGGC
GGCTGATGCCGGTGAAATGAAGTACATGCAGCACCATCATCATCATCATG
CCGCTGCCGCGGCAGCTGCCCACCATCAGTTGCCCTCGTCGCCATCGCCC
AATGGCCAGGGCAATGGTGGCGGACTTGGATTGGGTTCCGGTTGCGGGTT
GGGCTCATGGAGTGCCCTCCATCCGGATCCGTGGATGCAAACCCATCATA
CGCACCATCTGCCCGCCGCCGCTGCCGTTGCCTCGGCCGCTGATACCGTC
AAGCAGGAGATGTCGCATCTCTCGCAGCAGACGCGCATCCAACAGGGCAT
GGCCTCGCCCCATGCCGCCTGGCATGCCCCCCATGCGGGACACTATGCGC
CAACGGGCGGGTCACCGTTGCATTACCATCATGCCATGAAACGGAATGCT
CCATCATCCGGCCCATGCGGTTGCAGCGGCCCATCATCAGAGTGTGGCGC
TGCTGCATCATACGCTGCGCGGGGAATCGCCACAGCTGCACATACACCCA
TCACATGGGCGGCGGCGATCGGGTGCCATAAGCGGCGGCGAGGAGACACT
CCCACGTCCGATGATCTGGAGGCCTTGCAGCAGTTCAGCACGCCGAATCA
AGCTGGCCTTTACCCAGGCCGATTTGGGCCTGGCACTGGGCCTTCTCAAT
GGCAATGGTGTCTCTCCAGACGACCATCT
FMO08172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vvl-RF | 4380 | CG10037-RF | 669..1443 | 9..779 | 3470 | 97.3 | Plus |
| vvl-RE | 4380 | CG10037-RE | 669..1443 | 9..779 | 3470 | 97.3 | Plus |
| vvl-RC | 4380 | CG10037-RC | 669..1443 | 9..779 | 3470 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6790826..6791600 | 9..779 | 3250 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:51 has no hits.
FMO08172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:22 Download gff for
FMO08172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RB | 221..1003 | 1..779 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:55 Download gff for
FMO08172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RA | 661..1443 | 1..779 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:19 Download gff for
FMO08172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RC | 661..1443 | 1..779 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:19 Download gff for
FMO08172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6790818..6791600 | 1..779 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:55 Download gff for
FMO08172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6783918..6784700 | 1..779 | 96 | | Plus |
