FMO08173.5prime Sequence
329 bp (329 high quality bases) assembled on 2010-03-10
> FMO08173.5prime
CAGTCGACATGGACATCTCAAAGGCACCAAATCCGCGAAAACTGGAGCTG
TGTCGCAAATACTTCTTTGCTGGCTTTGCATTTCTGCCCTTTGTGTGGGC
CATTAACGTTTGCTGGTTTTTCACGGAGGCCTTCCATAAGCCACCATTTT
CGGAGCAGAGCCAAATAAAGAGATATGTTATATACTCTGCAGTGGGGACT
CTATTCTGGCTGATAGTACTAACTGCCTGGATAATAATATTCCAGACAAA
TCGCACAGCCTGGGGCGCCACAGCGGACTATATGAGCTTCATCATACCCC
TAGGCAGTGCAGCAAGCTTTCTAGACCAT
FMO08173.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pen-2-RB | 1181 | CG33198-RB | 182..485 | 8..311 | 1520 | 100 | Plus |
pen-2-RA | 543 | CG33198-RA | 182..485 | 8..311 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18277930..18278066 | 175..311 | 685 | 100 | Plus |
2R | 25286936 | 2R | 18277746..18277855 | 65..174 | 535 | 99.1 | Plus |
2R | 25286936 | 2R | 18277620..18277681 | 8..69 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:21 has no hits.
FMO08173.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:07 Download gff for
FMO08173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pen-2-RA | 95..398 | 8..311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:55 Download gff for
FMO08173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pen-2-RA | 182..485 | 8..311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:55 Download gff for
FMO08173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pen-2-RA | 182..485 | 8..311 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:55 Download gff for
FMO08173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18277620..18277681 | 8..69 | 100 | -> | Plus |
2R | 18277751..18277855 | 70..174 | 100 | -> | Plus |
2R | 18277930..18278066 | 175..311 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:55 Download gff for
FMO08173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14165125..14165186 | 8..69 | 100 | -> | Plus |
arm_2R | 14165256..14165360 | 70..174 | 100 | -> | Plus |
arm_2R | 14165435..14165571 | 175..311 | 100 | | Plus |