FMO08176.5prime Sequence
807 bp (807 high quality bases) assembled on 2010-03-10
> FMO08176.5prime
CAGTCGACATGTTCGAGGCACGCCTGGGTCAAGCCACCATCCTGAAGAAG
ATCTTGGATGCCATCAAGGATCTGCTCAATGAGGCAACCTTCGATTGCAG
CGACTCCGGCATTCAGCTACAGGCCATGGACAACTCCCATGTGTCGCTTG
TCTCGCTGACCCTGCGTTCCGATGGCTTCGACAAGTTTCGCTGCGACCGC
AATCTCTCCATGGGCATGAATCTGGGCAGCATGGCCAAGATTCTGAAATG
CGCCAACAACGAGGACAATGTGACGATGAAGGCGCAGGATAACGCCGACA
CTGTCACCATCATGTTCGAATCGGCTAACCAGGAGAAGGTATCGGACTAC
GAGATGAAACTGATGAACCTCGACCAGGAGCACCTGGGCATACCGGAGAC
AGACTTCTCGTGCGTGGTCCGCATGCCGGCCATGGAGTTCGCTCGCATCT
GCCGCGATCTGGCGCAGTTCAGCGAATCCGTTGTGATCTGCTGCACCAAG
GAGGGCGTCAAGTTCTCGGCCAGCGGCGATGTGGGCACCGCCAACATTAA
GCTAGCCCAAACCGGCTCTGTCGACAAGGAGGAGGAGGCGGTGATCATCG
AGATGCAGGAGCCGGTGACGCTGACATTTGCCTGTCGCTACCTGAACGCC
TTCACAAAGGCGACGCCATTGTCCACCCAAGTGCAGCTGTCGATGTGCGC
AGATGTTCCGCTGGTAGTCGAGTATGCGATCAAGGATCTGGGTCACATTC
GCTACTACCTGGGCACCCAAGATCGAGGACAACGAGACAGCAAGCTTTCT
AGACCAT
FMO08176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCNA-RA | 1070 | CG9193-RA | 163..942 | 9..789 | 3880 | 99.9 | Plus |
| PCNA-RB | 997 | CG9193-RB | 90..869 | 9..789 | 3880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20261882..20262556 | 789..114 | 3330 | 99.9 | Minus |
| 2R | 25286936 | 2R | 20262614..20262721 | 116..9 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:55:03 has no hits.
FMO08176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:04 Download gff for
FMO08176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus209-RA | 129..920 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:32 Download gff for
FMO08176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus209-RB | 82..873 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:00 Download gff for
FMO08176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCNA-RB | 82..873 | 1..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:00 Download gff for
FMO08176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20261878..20262553 | 117..794 | 99 | <- | Minus |
| 2R | 20262614..20262729 | 1..116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:32 Download gff for
FMO08176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16149383..16150058 | 117..794 | 99 | <- | Minus |
| arm_2R | 16150119..16150234 | 1..116 | 97 | | Minus |
