FMO08179.5prime Sequence
924 bp (884 high quality bases) assembled on 2010-03-10
> FMO08179.5prime
CAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGCCCGAGGAG
CTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTGGAACAACC
GCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACTGCAGTCGG
AACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACCAGCTGAGC
GTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCCAGCTCGCG
TCGCAAATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGATGACGACG
ATGATGGCGCCACCGCCGTGTTCCCCAAGACAGATGAGCAGCGCGCCCGG
CTGGTCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGA
GCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAAAGGTTCAGCCGG
GTGACTTTATCATCCGCCAGGGTGACGACGGCGATAACTTTTATGTTATT
GAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACATTAACACCTA
CAATCACACTGGACTCTTCGGTGAATTAGCGCTGCTCTACAATATGCCCA
GAGCGGCCACCGTGCAGGCGGAAACGAGTGGTCTACTTTGGGCCATGGAT
CGCCAGACCTTCCGCCGCATCCTCTTGAAGTCGGCCTTCAGGAAGCGGAA
AATGTACGAGGAGCTGTTGAACAGCGTGCCCATGCTGAAGGCCTGCAGAA
CTACGACGCATGAATCTGCGGATGCCTTGTTTTCCAAGAGCTACGACAAT
GCGAACGCATCATCAACAGGGTGACGCCGCCGACGGCTTGTACTTCATCG
AGAGGGAACGGTGTCCGTGGCGCTGGGACCACTACGAAACCGAGTGGGAG
ATCTCCTTGCTGGCAAGGGAATGA
FMO08179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R2-RE | 2102 | CG15862-RE | 510..1427 | 9..920 | 4185 | 97.6 | Plus |
Pka-R2-RD | 1614 | CG15862-RD | 353..1270 | 9..920 | 4185 | 97.6 | Plus |
Pka-R2-RB | 4108 | CG15862-RB | 374..1291 | 9..920 | 4185 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10005157..10005370 | 222..9 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 9999734..9999916 | 404..222 | 915 | 100 | Minus |
2R | 25286936 | 2R | 9998420..9998564 | 744..600 | 725 | 100 | Minus |
2R | 25286936 | 2R | 9999425..9999529 | 505..401 | 525 | 100 | Minus |
2R | 25286936 | 2R | 9998707..9998802 | 601..506 | 480 | 100 | Minus |
2R | 25286936 | 2R | 9997797..9997890 | 913..820 | 195 | 85.3 | Minus |
2R | 25286936 | 2R | 9998276..9998349 | 816..746 | 190 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:57 has no hits.
FMO08179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:52 Download gff for
FMO08179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RC | 292..1175 | 9..887 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:24 Download gff for
FMO08179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RB | 374..1257 | 9..887 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:01 Download gff for
FMO08179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RB | 374..1257 | 9..887 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:01 Download gff for
FMO08179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10005157..10005370 | 9..222 | 100 | | Minus |
2R | 9998415..9998562 | 602..748 | 99 | <- | Minus |
2R | 9998707..9998802 | 506..601 | 100 | <- | Minus |
2R | 9999425..9999525 | 405..505 | 100 | <- | Minus |
2R | 9999734..9999915 | 223..404 | 100 | <- | Minus |
2R | 9998271..9998346 | 749..820 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:24 Download gff for
FMO08179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5892662..5892875 | 9..222 | 100 | | Minus |
arm_2R | 5885776..5885851 | 749..820 | 92 | <- | Minus |
arm_2R | 5885920..5886067 | 602..748 | 99 | <- | Minus |
arm_2R | 5886212..5886307 | 506..601 | 100 | <- | Minus |
arm_2R | 5886930..5887030 | 405..505 | 100 | <- | Minus |
arm_2R | 5887239..5887420 | 223..404 | 100 | <- | Minus |