FMO08180.5prime Sequence
1139 bp (1018 high quality bases) assembled on 2010-03-10
> FMO08180.5prime
CAGTCGACATGGATGACCGAAATGAGATACCTCAGGATGGCCCCGCCAGC
ATGGAACCCGAGGGCGTCATCGAGTCCACCTGGCACGAGGTGTACGACAA
CTTCGATGACATGAACTTGCGCGAGGAGTTGCTGCGCGGCATCTACGGTT
ATGGTTTCGAGAAGCCGTCGGCCATCCAGCAGCGCGCCATCATTCCCTGT
GTGAGGGGTCGCGATGTCATTGCCCAGGCCCAGTCGGGAACTGGCAAGAC
TGCCACCTTCTCGATTGCTATCCTTCAGCAAATCGACACGAGCATTCGCG
AGTGCCAGGCGCTGATCCTGGCCCCCACTCGCGAGTTGGCCACGCAGATC
CAGCGCGTGGTGATGGCGCTCGGCGAGTACATGAAGGTGCACTCGCACGC
CTGCATTGGCGGCACTAACGTGCGCGAAGACGCCCGCATCTTGGAATCCG
GTTGCCATGTGGTGGTGGGCACTCCTGGCCGCGTCTACGACATGATCAAC
CGCAAGGTGCTGCGCACCCAGTACATCAAGCTGTTCGTGCTGGATGAGGC
CGATGAGATGTTGTCCCGCGGTTTCAAGGATCAGATCCAGGATGTCTTCA
AGATGCTGCCCCCAGATGTGCAGGTCATCCTGCTGTCCGCCACCATGCCG
CCGGATGTGCTCGAAGTGAGCCGTTGCTTCATGCGTGATCCCGTCAGCAT
CCTGGTTAAGAAGGAGGAACTGACCCTTGAGGGTATCAAGCAGTTTTACG
TCAACGTGAAGCAGGAGAACTGGAAACTGGGCACCCTTTGCGATCTGTAC
GATACGCTGTCCATCACCCAGTCGGTAATCTTCTGCAACACCCGTCGCAA
GGTGGACCAACTGACCCAGGAGATGTCTATCCACAACTTCACCGTCTCGG
CCATGCACGGCGACATGGAGCAGCGTGATCGCGAGGTCATCATGAAACAA
TTCCGTTCGGGCTCGTCTCGTGTTCTGATTACCACTGATTTACTGGCGCC
GCGGTATTGATGTCAGCAGTGTCGTGGTCATTCACTATGGATCTGCTCCT
CGAACGGAGAACTACATTCAAAAATTGGTCGCGGGGGGTCGTTTCGGTCG
CAAGGGGGTGCGATCACTTTATACGAGTGAGGATCGACA
FMO08180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-4a-RF | 1939 | CG9075-RF | 227..1344 | 9..1122 | 5235 | 98.5 | Plus |
| eIF-4a-RE | 2021 | CG9075-RE | 71..1188 | 9..1122 | 5235 | 98.5 | Plus |
| eIF-4a-RD | 1960 | CG9075-RD | 458..1575 | 9..1122 | 5235 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5984010..5984626 | 237..853 | 3085 | 100 | Plus |
| 2L | 23513712 | 2L | 5983010..5983237 | 11..238 | 1140 | 100 | Plus |
| 2L | 23513712 | 2L | 5984717..5984879 | 850..1013 | 770 | 99.4 | Plus |
| 3R | 32079331 | 3R | 8314210..8314350 | 717..857 | 270 | 79.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:04 has no hits.
FMO08180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:06 Download gff for
FMO08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4a-RB | 290..1419 | 3..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:56 Download gff for
FMO08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4a-RD | 220..1349 | 3..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:16 Download gff for
FMO08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4a-RD | 451..1580 | 3..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:16 Download gff for
FMO08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5983003..5983236 | 1..237 | 97 | -> | Plus |
| 2L | 5984011..5984624 | 238..851 | 100 | -> | Plus |
| 2L | 5984719..5984942 | 852..1072 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:56 Download gff for
FMO08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5983003..5983236 | 1..237 | 97 | -> | Plus |
| arm_2L | 5984011..5984624 | 238..851 | 100 | -> | Plus |
| arm_2L | 5984719..5984942 | 852..1072 | 94 | -> | Plus |
