FMO08181.5prime Sequence
1094 bp (997 high quality bases) assembled on 2010-03-10
> FMO08181.5prime
CAGTCGACATGTCGGAGGCTGCCACGCCCCCAGGATCAGTGCCAGGAACA
GTATTCCCACCTGGCTTCGATCCCACTGCCGAATCGGTGGAGAAGACTCT
CTGCTTCCGGGGTTTCTGGGCCTGGGCCGTGCTGATATTCCTGATTGTTC
TGGGCATATTGCTCTTCATGTGGCTGCTGCGCAAGTGCATCCAAGGACCG
GCCTACCGGAAGGCCAATCGCATCGATGGCAAGGTGGTCATCGTCACCGG
CTGCAACACGGGCATTGGCAAGGAGACGGTCCTCGAGTTGGCCAAGCGGG
GTGCCCGCGTCTACATGGCCTGTCGGGATCCCGGTCGGTGTGAGGCCGCA
CGACTGGATATCATGGATCGCAGTCGCAACCAGCAGCTCTTCAATCGCAC
CCTGGATCTGGGCTCCCTGCAGTCGGTGAGAAATTTCGTGGAGCGCTTCA
AGGCGGAGGAATCCCGGCTGGATATACTGATCAATAATGCCGGCGTTATG
GCCTGTCCCAGGACCCTCACAGCCGATGGCTTTGAGCAGCAGTTCGGTGT
CAATCATCTGGGACACTTTTTGCTCACGAATCTGCTGCTGGATCGACTGA
AGCACAGCTCGCCCAGTCGCATTGTGGTGGTCAGTTCGGCGGCACATCTC
TTTGGGCGAATCAACCGCGAGGATCTGATGAGCGAGAAGAACTACAGCAA
GTTCTTTGGGGCGTACAGTCAGTCCAAGCTGGCCAACATCCTGTTTACCC
TCAAGCTGAGCACCATCCTTAAGGACACCGGCGTAACGGTGAACTGTTGT
CATCCGGGTGTGGTCCGCACCGAGATCAACCGCCACTTTTCCGGTCCCGG
CTGGATGAAGACCGCCCTGCAGAAGGGCTCGCTGTACTTCTTTAGACACC
CAAGCTGGCGCCCAGACCCAGCTGAGATGGCGCTGGATCCGCAGTTGGAG
GGCTCCCTGGTGCTATTACTCGGACTGCATGCGCTGGTCATTGTTTCCGT
GGATTCGGAATATGCCGACCGCCGACTGTTGTGGCGAGAGACAGAAGCTG
CTGGACTGTCACCCGCTGGACACCCTCCCCTGTCGAGCCCTCGA
FMO08181.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3842-RD | 2655 | CG3842-RD | 1062..2131 | 9..1070 | 5015 | 98.5 | Plus |
| CG3842-RC | 2049 | CG3842-RC | 456..1525 | 9..1070 | 5015 | 98.5 | Plus |
| CG3842-RB | 1875 | CG3842-RB | 282..1351 | 9..1070 | 5015 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6342138..6343176 | 9..1041 | 4835 | 99 | Plus |
| 2R | 25286936 | 2R | 7664079..7664180 | 228..329 | 255 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:03 has no hits.
FMO08181.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:07 Download gff for
FMO08181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3842-RB | 326..1400 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:07 Download gff for
FMO08181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3842-RB | 277..1351 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:56 Download gff for
FMO08181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3842-RB | 277..1351 | 1..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:56 Download gff for
FMO08181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6342133..6343207 | 1..1070 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:07 Download gff for
FMO08181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6236166..6237240 | 1..1070 | 98 | | Plus |
