FMO08182.5prime Sequence
1091 bp (994 high quality bases) assembled on 2010-03-10
> FMO08182.5prime
CAGTCGACATGAATATTTGGCAACAAAAATTCCTGAAACGACCCGCGGAG
GATGTTGACAATGGCCCTGACAGCTTTGAACCGCCGCACAAGTTGCCTAA
TAATAACAACAATAGCAATAGCAACAACAACAACGGCAATGCGAATGCCA
ACAACGGCGGCAATGGCTCCAATACCGGCAACAACACGAACAACAATGGC
AACAGCACCAACAACAACGGCGGCAGCAACAACAACGGCTCTGAGAATCT
AACCAAATTCTCGGTGGAAATTGTTCAGCAACTGGAGTTTACCACATCGG
CGGCCAATTCGCAACCGCAACAGATTAGCACTAATGTCACTGTAAAGGCG
CTGACCAACACATCGGTGAAGAGTGAACCAGGTGTGGGCGGTGGCGGAGG
GGGCGGCGGTGGAGGCGGTAGCGGTAACAACAACAATAACGGAGGCGGGG
GAGGCGGCGGAAACGGTAATAACAACAACAACGGAGGTGATCATCACCAG
CAACAGCACCAGCAGCAGCAGCAACAACAAGGCGGCGGACTGGGTGGCCT
CGGGAATAATGGAAGGGGCGGGGGACCCGGCGGCATGGCGACGGGTCCCG
GGGGCGTGGCCGGTGGACTTGGCGGCATGGGCATGCCACCCAACATGATG
TCCGCCCAACAGAAGTCGGCCCTCGGCAATCTGGCCAATTTGGTGGAGTG
CAAACGGGAACCGGATCACGATTTTCCCGATCTCGGCTCATTGGACAAGG
ATGGCGGTGGCGGACAGTTTCCCGGCTTTCCCGATCTACTCGGGGATGAT
AACTCGGAGAACAACGACACGTTCAAGGATCTCATCAACAACCTGCAGGA
CTTCATCCCAGTTTCTCGATGGCTTCGATGAGAAACCGCTGCTGGACATA
AAGACGGAGGATGGCATCAAGTTGGAGCCGCCCAATGCCCAGGATTTGAT
CAATAGCCTGAATGTGAAGTCGAGGGCGATTGGGTCATGGTTTCGTGCTT
GGACTGGGTCTGGAAATCCTGCATGATATGCGTGTGCATCCTGGCAACAG
TGGCTTTCCACGATCGATGGGGACAGGGTGGCTCATGCTGC
FMO08182.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mam-RC | 1941 | CG8118-RC | 557..1623 | 9..1059 | 4865 | 97.9 | Plus |
| mam-RD | 7884 | CG8118-RD | 1353..2408 | 20..1059 | 4810 | 97.9 | Plus |
| mam-RB | 7590 | CG8118-RB | 1059..2114 | 20..1059 | 4810 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14038704..14039688 | 15..995 | 4680 | 99.3 | Plus |
Blast to na_te.dros performed 2014-11-28 20:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2517 | 99..236 | 276 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2404..2631 | 102..324 | 254 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6846 | 416..529 | 216 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2525 | 415..530 | 199 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2426 | 372..530 | 192 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2410..2519 | 420..530 | 192 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6933 | 420..541 | 192 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6838 | 426..538 | 185 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2984 | 153..530 | 184 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6897 | 420..529 | 183 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2474 | 403..530 | 181 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2393 | 462..530 | 180 | 75.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2399 | 455..530 | 179 | 72.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2371 | 418..529 | 176 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2442 | 415..536 | 174 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6864 | 416..529 | 174 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1577 | 471..530 | 171 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6813 | 454..529 | 169 | 70.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1140 | 454..529 | 169 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2413 | 401..529 | 165 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1155 | 458..532 | 165 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6793 | 468..530 | 159 | 74.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1128 | 471..529 | 157 | 76.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1161 | 425..529 | 153 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6772 | 490..530 | 151 | 85.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2588..2650 | 460..529 | 146 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2663 | 458..530 | 146 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2374 | 459..529 | 145 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1589 | 464..530 | 141 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2345 | 492..530 | 141 | 84.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6756 | 493..529 | 140 | 86.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3246..3314 | 464..530 | 133 | 68.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 968..1006 | 491..529 | 132 | 82.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2359 | 490..529 | 128 | 80 | Plus |
| blood | 7410 | blood BLOOD 7410bp | 2957..3021 | 425..492 | 126 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2339 | 498..530 | 120 | 84.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1102 | 490..530 | 115 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1552 | 495..529 | 112 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7954..7988 | 494..528 | 112 | 80 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9398..9432 | 494..528 | 112 | 80 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1098 | 490..529 | 110 | 75 | Plus |
FMO08182.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:01 Download gff for
FMO08182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mam-RC | 538..1559 | 4..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:47 Download gff for
FMO08182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mam-RC | 554..1575 | 4..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:50 Download gff for
FMO08182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mam-RC | 554..1575 | 4..1019 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:50 Download gff for
FMO08182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14038704..14039716 | 15..1019 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:47 Download gff for
FMO08182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9926209..9927221 | 15..1019 | 98 | | Plus |
