Clone FMO08185 Report

Search the DGRC for FMO08185

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:81
Well:85
Vector:pMK33-CFH-BD
Associated Gene/Transcriptflw-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08185.5prime Sequence

1124 bp (995 high quality bases) assembled on 2010-03-10

> FMO08185.5prime
CAGTCGACATGGGCGACTTCGATCTGAATGTGGACAGCTTGATACAGCGG
CTGCTGGAGAACTTTAAAAAACAAAAAGAGGCCGAAGAGCACGCCCAGAA
GCTGCTAATCGCTCAACAATTGGCCGCCGCCGGCGGAGCATCCGGCGCAT
CTGCCACATCGCCCACATCCAGCAGCAATTACTCGTCGATGGCGGCGGTG
GCCTCCTTTGGATCCGGATACGGATCGGGATCTGGTGCTGGTGCTCCTGG
TGCCGGCGCTGGCCCAGGATCCAGCCATGATCCGCTCGACGATCTCACCG
AACAGCAGCGCCGTCTGCTCCAGCAATACTCGATATCGCCGCCCAGCGAG
ACGATGATATCGGCCGATGGCGACCAGATCACCGTCCATCATCCGCGCGA
GGAGCCCAAGAAATCCAGATTGAAACTGCGCGATTTTTTCGTCGCCGAGT
TTGTGCGCAGCTGCCGAACGGGCAAACAGGTCCAGATGACGGAGGCGGAG
GTGCGTGGCCTCTGTCTCAAGTCGCGCGAGATCTTCTTGCAACAGCCCAT
CCTGCTGGAACTGGAGGCACCGCTGATCATCTGCGGCGACATCCACGGCC
AGTACACAGACCTGTTGCGCCTGTTCGAGTACGGCGGATTCCCTCCGGCT
GCCAACTACTTGTTCCTCGGCGACTACGTCGATCGGGGCAAGCAGTCCCT
GGAGACCATCTGTCTGCTGCTGGCCTACAAGATCAAATATCCGGAGAACT
TCTTCTTGTTGCGCGGCAACCACGAGTGCGCCAGTATTAATAGGATTTAC
GGCTTCTACGATGAGTGCAAGCGCCGATACAATGTCAAACTGTGGAAGAC
TTTCACAGATTGCTTCAACTGTCTGCCGGTAGCCGCCATTATTGACGAAA
AGATCTTCTGCTGCCACGGCGGCCTCAGTCCCGATCTTCAGGCATGAGCA
GATCCGTCGCCTAATGCGACCACAGATGTGCCGATACCGGGTACTGTGCG
ATCTTCTGGGGAGTGATCCCGACAAGATTTCAGTGGGGCGAAAATGATCG
CGGTGTGAGCTCACTTCGGTGTGATGTGTCCTCAGTTTGACGCCACGACT
GACTGACTGCTGCACATCAGGTTG

FMO08185.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
flw-RA 2524 CG2096-RA 553..1635 9..1078 5080 98.6 Plus
flw-RC 3883 CG2096-RC 605..1242 454..1078 2855 97.6 Plus
flw-RB 2131 CG2096-RB 605..1242 454..1078 2855 97.6 Plus
flw-RC 3883 CG2096-RC 553..604 9..60 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10388443..10388835 61..453 1965 100 Plus
X 23542271 X 10406352..10406701 453..802 1750 100 Plus
3R 32079331 3R 12425158..12425574 935..519 1110 84.4 Minus
X 23542271 X 15359804..15360262 938..480 1035 81.7 Minus
X 23542271 X 10406761..10407031 801..1061 900 94.8 Plus
3R 32079331 3R 24518898..24519192 508..802 755 83.7 Plus
2R 25286936 2R 17955968..17956347 931..552 415 73.9 Minus
3R 32079331 3R 24519597..24519730 804..937 310 82.1 Plus
X 23542271 X 10386512..10386563 9..60 260 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:18:09 has no hits.

FMO08185.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:11 Download gff for FMO08185.5prime
Subject Subject Range Query Range Percent Splice Strand
flw-RA 580..1642 9..1061 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:58 Download gff for FMO08185.5prime
Subject Subject Range Query Range Percent Splice Strand
flw-RA 553..1615 9..1061 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:17 Download gff for FMO08185.5prime
Subject Subject Range Query Range Percent Splice Strand
flw-RA 553..1615 9..1061 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:17 Download gff for FMO08185.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10386512..10386563 9..60 100 -> Plus
X 10388443..10388835 61..453 100 -> Plus
X 10406353..10406700 454..801 100 -> Plus
X 10406762..10407077 802..1097 92 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:58 Download gff for FMO08185.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10300795..10301110 802..1097 92 -> Plus
arm_X 10280545..10280596 9..60 100 -> Plus
arm_X 10282476..10282868 61..453 100 -> Plus
arm_X 10300386..10300733 454..801 100 -> Plus