FMO08187.5prime Sequence
1104 bp (1025 high quality bases) assembled on 2010-03-10
> FMO08187.5prime
CAGTCGACATGGCAGACGACGATTTGAGGGCACTGGTCGATAGCCTGGAT
GACGCCTCGCAGGAGGACCTGGCCAAGGTCATCGCCAACTTCTCCGTGGA
CATGCTGCAGCGGGCCAGCGCCCTAATTGGCGCCCAGCAGGGCAGCAGTG
GGGGGCAGCTCCAGAACCGCACGCTACAGTGTCAACAGCAGCAGCAGCGG
GAGGAGGAGCAGGCATCCCTGGAGGCCCTAGCATCTGGTGGCAAGCGGAT
TTTACAATGTCCCAGCTCGTTCGATTCGGTCCTGTGCTGGCCACGCACAA
ACGCCGGCAGTCTGGCTGTACTACCCTGTTTCGAGGAATTCAAGGGCGTG
CACTACGACACCACAGACAATGCCACCCGCTTTTGCTTTCCAAACGGAAC
GTGGGATCACTATTCGGACTATGACCGCTGTCACCAGAACTCGGGCTCCA
TACCGGTGGTGCCCGACTTCTCACCCAACGTCGAACTGCCGGCCATCATA
TATGCCGGCGGTTATTTCCTGAGCTTCGCCACCTTGGTGGTGGCTCTCAT
CATATTCCTCAGCTTTAAAGATCTTCGTTGCCTGCGAAACACCATTCATG
CCAATTTGTTCCTCACCTACATCACATCCGCACTCCTCTGGATACTCACA
CTGTTCCTGCAAGTGATAACCACAGAGTCTAGTCAGGCTGGCTGCATAAC
GTTGGTAATCATGTTTCAGTACTTTTACCTAACCAACTTTTTCTGGATGT
TTGTGGAGGGCCTCTATCTGTACACGCTGGTGGTGCAAACATTCTCCAGT
GATAACATTAGCTTTATTATCTACGCCCTCATCGGCTGGGGCTGTCCAGC
CGTATGCATTTTGGTGTGGTCCATTGCCAAGGCATTTGCTCCGCATCTCG
AGACGAGCACTTCAATGGGCTGGAAATGATTGTGCATGATGCGTGATCTC
ACATTGACTGATTATCAGGTACTGCATCACTGGCTTTGCTGGTATCTAGC
ATCCTCATACGCATCATGTGGGTACTCATCACTAATAACGTTCTGCCATA
CTGAACGCGGCAGAATACCAGCCTCGAGGCTGTGTGAGCTGATACCTCTC
CTTT
FMO08187.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh44-R2-RB | 3069 | CG12370-RB | 556..1670 | 7..1100 | 4945 | 97.3 | Plus |
Dh44-R2-RA | 2100 | CG12370-RA | 556..1670 | 7..1100 | 4945 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12480932..12481173 | 7..248 | 1210 | 100 | Plus |
2R | 25286936 | 2R | 12484706..12484910 | 364..568 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 12485268..12485429 | 759..919 | 760 | 99.4 | Plus |
2R | 25286936 | 2R | 12484538..12484656 | 248..366 | 595 | 100 | Plus |
2R | 25286936 | 2R | 12484966..12485066 | 569..669 | 490 | 99 | Plus |
2R | 25286936 | 2R | 12485116..12485211 | 665..760 | 480 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2376 | 155..217 | 121 | 73.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1084..1141 | 155..212 | 119 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6802 | 134..212 | 114 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6823 | 156..212 | 114 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6781 | 155..212 | 110 | 65.5 | Plus |
FMO08187.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:13 Download gff for
FMO08187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12370-RB | 532..1574 | 1..1035 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:48 Download gff for
FMO08187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh44-R2-RA | 552..1594 | 1..1035 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:13 Download gff for
FMO08187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh44-R2-RA | 552..1594 | 1..1035 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:13 Download gff for
FMO08187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12480928..12481173 | 1..248 | 98 | -> | Plus |
2R | 12484539..12484656 | 249..366 | 100 | -> | Plus |
2R | 12484709..12484910 | 367..568 | 100 | -> | Plus |
2R | 12484966..12485062 | 569..665 | 100 | -> | Plus |
2R | 12485117..12485210 | 666..759 | 100 | -> | Plus |
2R | 12485269..12485429 | 760..919 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:48 Download gff for
FMO08187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8372471..8372567 | 569..665 | 100 | -> | Plus |
arm_2R | 8372622..8372715 | 666..759 | 100 | -> | Plus |
arm_2R | 8372774..8372934 | 760..919 | 99 | -> | Plus |
arm_2R | 8368433..8368678 | 1..248 | 98 | -> | Plus |
arm_2R | 8372044..8372161 | 249..366 | 100 | -> | Plus |
arm_2R | 8372214..8372415 | 367..568 | 100 | -> | Plus |