FMO08188.5prime Sequence
1148 bp (1016 high quality bases) assembled on 2010-03-10
> FMO08188.5prime
CAGTCGACATGCTGTGGGAAACTATTGTGGAGGAAAACAACTGCAGCATG
GATTGCAATATCAGTAATAACACCAGCAGTTCGAGTAGCATCAACAAAAT
GAGTGGATCTCGTCGTGCTCGCCGTTCCCTGGAACTGATGAGCATGGACC
AGGAGGAGCTGTCGTTCTACGACGACGACGTTGTGCCCCAGGATCAGCAG
CGATCGGCCAGTCCGGAGCTGATGGGTCTGCTCTCGCCGGAGGGCTCGCC
CCAGCGCTTCCAGATCGTCCGCCAGCCGAAAATTCTGCCAGCTATGGGAG
TATCAAGTGATCACACGCCGGCGCGCAGCTTCCGCATCTTCAACAGCCTG
TCCTCCACATGCTCCATGGAGTCCTCCATGGACGATGAGTACATGGAGCT
CTTCGAGATGGAGTCGCAGAGCCAACAGACCGCCCTGGGCTTCCCCAGTG
GCCTAAACTCGCTGATCAGCGGCCAGATCAAGGAGCAGCCTGCTGCCAAA
TCGCCAGCGGGTCTGTCCATGCGCCGCCCTTCGGTCAGAAGGTGCCTCAG
CATGACGGAGAGCAACACCAACAGCACCACCACCCCACCACCAAAGACCC
CAGAGACTGCCCGGGATTGCTTCAAGCGCCCGGAACCGCCAGCATCGGCC
AACTGCTCGCCCATCCAGAGCAAACGCCATCGCTGCGCCGCCGTTGAGAA
GGAGAACTGCCCCGCACCCAGCCCACTCAGCCAGGTCACGATTAGCCACC
CCCCTCCACTGAGGAAGTGCATGTCCCTGAACGACGCCGAGATCATGTCC
GCCCTGGCCCGCTCCGAGAACCGCAACGAGCCCGAGCTAATCGGCGACTT
CAGCAAGCCTATGCCCTGCTCCTGATGGAGGGTCGTCATCGGGATCTGAG
AGCATCTCCAGCGAAACAGTGGCTCGCCTGCTTAAGGCGAGTTCAGCGAT
AGTGGCAGCTACCGCATCATCGACTGCGCTACCCTACGAATTCGAGGGCG
GCCACATCGGAGGGAGCAAGACCTGTACACCACGAGCAGATCCTCGATGA
TTCTCTCACGTCAACGAACTGACTGCAACCAGCAGCAAACGGCGATCGGG
AACAGCGCACTCTTTATCTTTCCACTGCATTCTCTGGAGCGTGAACGA
FMO08188.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stg-RB | 2747 | CG1395-RB | 873..2028 | 9..1143 | 5005 | 97 | Plus |
| stg-RA | 2589 | CG1395-RA | 398..1553 | 9..1143 | 5005 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29252966..29253964 | 1050..62 | 4440 | 98.4 | Minus |
| 3R | 32079331 | 3R | 29254873..29254928 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:06 has no hits.
FMO08188.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:14 Download gff for
FMO08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 846..1921 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:10 Download gff for
FMO08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 866..1941 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:23 Download gff for
FMO08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg-RA | 391..1466 | 1..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:23 Download gff for
FMO08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29252966..29253961 | 65..1050 | 98 | <- | Minus |
| 3R | 29254873..29254935 | 1..64 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:10 Download gff for
FMO08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25078688..25079683 | 65..1050 | 98 | <- | Minus |
| arm_3R | 25080595..25080657 | 1..64 | 93 | | Minus |
