FMO08189.5prime Sequence
1157 bp (1035 high quality bases) assembled on 2010-03-10
> FMO08189.5prime
CAGTCGACATGGGTAACTGCCTCACCACACAGAAGGGCGAACCCGACAAG
CCCGCAGATCGAATCAAGCTGGACGACCCGCCCACCATCGGAGTCGGAGT
GGGCGTGCCACAAATCCCCATGCCCTCACACGCCGGACAGCCACCGGAGC
AGATACGTCCGGTTCCCCAGATCCCGGAGAGCGAAACGGCAGGTGCCAAC
GCCAAGATTTTTGTCGCCCTCTACGACTACGACGCCCGCACCGACGAGGA
TTTGAGCTTCCGCAAGGGAGAGCACTTGGAGATACTGAATGACACGCAGG
GTGACTGGTGGCTGGCGCGGAGCAAGAAGACACGTTCGGAAGGCTACATT
CCATCCAATTATGTGGCCAAGTTGAAATCAATCGAAGCAGAACCCTGGTA
CTTCCGCAAAATCAAACGCATTGAGGCTGAGAAAAAACTTCTACTGCCAG
AGAACGAGCACGGTGCATTTTTAATTCGCGATTCCGAAAGCCGTCACAAC
GACTACTCGCTATCAGTGCGCGATGGCGATACGGTTAAGCATTATCGCAT
CAGACAATTGGACGAAGGCGGCTTCTTCATCGCCAGGCGCACGACATTCA
GAACCCTTCAGGAGCTGGTGGAACACTATTCGAAGGACTCTGATGGCCTA
TGCGTCAACCTCTGCAAGCCGTGTGTCCAGATCGAGAAGCCTGTAACTGA
GGGGCTTTCGCACCGCACTCGCGATCAGTGGGAGATCGACAGAACGTCTT
TGAAATTCGTGCGCAAACTGGGCTCCGGACAGTTTGGCGATGTCTGGGAG
GGATTGTGGAACAACACAACACCTGTGGCAATTAAAACTCTGAAATCTGG
TACAATGGACCCCAAGGATTTCTTAGCGGAAGCCCAGATCATGAAGAAAC
TGCGCCACACCAAGCTTATACAGTTGTACGCTGTCTGCACTGTTGAGGAG
CTATCTATATTATCACAGAGTTAATGAAGCACGGTTCACTGTTGGAATAT
CTCCAGCCATTGCAGGCAAGGGTCGTAGCCTTTAAATGCAAACTCTGATT
GATATGGCAGCGCAATAGCTGCTGGCATGCCTTACTTGGGAGTCCCAGAA
TAAATTTCTAAGGATTTAGCGGCGCGCATGTACTGGTAGGCATGAACATC
GTCAATT
FMO08189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src42A-RA | 3017 | CG44128-RA | 575..1728 | 9..1155 | 5470 | 98.7 | Plus |
| Src42A-RB | 6398 | CG44128-RB | 4046..4814 | 394..1155 | 3545 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5982418..5982709 | 9..300 | 1460 | 100 | Plus |
| 2R | 25286936 | 2R | 6010376..6010550 | 678..852 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 6010609..6010766 | 849..1005 | 740 | 99.4 | Plus |
| 2R | 25286936 | 2R | 6009063..6009184 | 395..516 | 610 | 100 | Plus |
| 2R | 25286936 | 2R | 5986570..5986666 | 298..394 | 485 | 100 | Plus |
| 2R | 25286936 | 2R | 6009268..6009355 | 514..601 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6009420..6009501 | 599..680 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 6010930..6011068 | 1005..1141 | 410 | 92.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:35:46 has no hits.
FMO08189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:15 Download gff for
FMO08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src42A-RA | 563..1725 | 1..1157 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:28 Download gff for
FMO08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src42A-RA | 566..1728 | 1..1157 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:22 Download gff for
FMO08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src42A-RA | 566..1728 | 1..1157 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:22 Download gff for
FMO08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6009271..6009355 | 517..601 | 100 | -> | Plus |
| 2R | 6009423..6009501 | 602..680 | 100 | -> | Plus |
| 2R | 6010379..6010547 | 681..849 | 100 | -> | Plus |
| 2R | 6010610..6010768 | 850..1006 | 98 | -> | Plus |
| 2R | 5982409..5982708 | 1..299 | 98 | -> | Plus |
| 2R | 5986572..5986666 | 300..394 | 100 | -> | Plus |
| 2R | 6009063..6009184 | 395..516 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:28 Download gff for
FMO08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1874077..1874171 | 300..394 | 100 | -> | Plus |
| arm_2R | 1896568..1896689 | 395..516 | 100 | -> | Plus |
| arm_2R | 1896776..1896860 | 517..601 | 100 | -> | Plus |
| arm_2R | 1896928..1897006 | 602..680 | 100 | -> | Plus |
| arm_2R | 1897884..1898052 | 681..849 | 100 | -> | Plus |
| arm_2R | 1898115..1898273 | 850..1006 | 98 | -> | Plus |
| arm_2R | 1869914..1870213 | 1..299 | 98 | -> | Plus |
