FMO08190.5prime Sequence
1126 bp (1043 high quality bases) assembled on 2010-03-10
> FMO08190.5prime
CAGTCGACATGGTGGGCACAACACTGAAAATGCGTGGCGATGAGAACGCT
TCGGAGAACTTCAAGCAAGTGCAATTGAAGAAATTGACGGTTCCTTCCAT
GGAGGCAACAACAAAACGCGCGGCCTTGGGCGATTTGCAGAATCGCGGCA
TAAGTCGTCCCATCGCAGCGAAGGATGCGGCACAGAAAGACTCCAAGGAT
CTCAAGCTCACAGACGCCCTGCGCAATGCCAAAGCTCGGGTGGACAGCCA
CTGGAAGAAACAGCCACTGGGCAGCACCAATGGCAATGGCAATGGCGCCG
TTCCGCCCAAGGTCAACGAGGGGGGCGTGTCGGCGTTTTTGCGTTCGAAT
TCGGTGCGCAATCGCGTTCCGACCAAGACCACTGTAGAACCCACTAAAGT
TACAGTCAAGTCCAGTTCTTCCGAGAACGTGAACGAGCCCACCTTAAAGC
GCGAGGACAGCAATCTGTCGAAGAAGTCGCTGACCAAACTGCGTGCCGCT
TTGGCCAAACCCGTGATGGGAGTTTCAGGAATTCGACGGGAACCAGTAGC
TGTTTCCCGCAAAGAGGCAGAGACCAAGAAGGAACTGCCAGAAACCAAGA
AGGACTCACTGGAAGTGAAAAAGGATGCGACCAGGATGCCCCTTATTAGG
GGCAACAGTGCAGTCACTACGACCACATCTACGATGCCCACCACCATGTC
CCTTTCCAGCAAGCGCTTGGCTGGAATCGAGGACATTGATGCCAATGACA
AGGAGAACCTGGTACTGGTCTCCGAATATGTAAACGACATCTACGACTAC
TTGTATCAGGTGGAGCTGGAGCAGCCCATTCACAAGGATCACCTGGCCGG
ACAGAAGGAGGTGTCCCACAAGATGCGAGCCGTGCTGATCGATTGGATCA
ACGAAGTCCACCTGCAGTTCCATCTGGCTGCAGAGACCTTCCAGCTGGCG
GTGGCTATCATTGATCGCTACCTGCAGTGGTCAAGACACCAAACGCACGT
ACTTGCAATTGGTGGGAGTGACAGCACTCCTTCATAGCACCAAGTACGAG
GGCTGTTCCCGCCGCAATCGGAGATTCGTCTCCATCACGGACAACCCTAA
CTGCCAGCAGATCGACGATGGACTGC
FMO08190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-RA | 2633 | CG3510-RA | 268..1391 | 9..1122 | 5280 | 98.7 | Plus |
| CycB-RE | 2627 | CG3510-RE | 268..1385 | 9..1122 | 5180 | 98.1 | Plus |
| CycB-RC | 2548 | CG3510-RC | 217..1306 | 43..1122 | 5110 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22804867..22805568 | 1092..396 | 3150 | 98.9 | Minus |
| 2R | 25286936 | 2R | 22805667..22805875 | 399..191 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 22805940..22806087 | 190..43 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:30 has no hits.
FMO08190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:16 Download gff for
FMO08190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 297..1417 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:35 Download gff for
FMO08190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 260..1380 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:59 Download gff for
FMO08190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 260..1380 | 1..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:59 Download gff for
FMO08190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22804827..22805564 | 400..1126 | 97 | <- | Minus |
| 2R | 22805667..22805875 | 191..399 | 100 | <- | Minus |
| 2R | 22805940..22806085 | 45..190 | 100 | <- | Minus |
| 2R | 22806646..22806689 | 1..44 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:35 Download gff for
FMO08190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18692332..18693069 | 400..1126 | 97 | <- | Minus |
| arm_2R | 18693172..18693380 | 191..399 | 100 | <- | Minus |
| arm_2R | 18693445..18693590 | 45..190 | 100 | <- | Minus |
| arm_2R | 18694151..18694194 | 1..44 | 93 | | Minus |
