FMO08191.5prime Sequence
1091 bp (984 high quality bases) assembled on 2010-03-10
> FMO08191.5prime
CAGTCGACATGTCGGAGATTGTCGACACCGAGCTGCTGGTCAACTGCACC
ATCCTCGCCGTCCGTCGATTCGAGCTGAATAGCATTGTGAACACCACGCT
CCTGGGCAGTCTCAACAGAACCGAGGTGGTCAGCCTCTTGTCGAGCATTA
TCGACAATCGGGATAATCTCGAGAGCATCAATGAGGCCAAAGACTTTCTG
ACCGAGTGCCTGTTTCCATCGCCGACAAGACCGTACGAGTTGCCATGGGA
GCAGAAAACGATTTGGGCTATAATTTTCGGTCTGATGATGTTTGTGGCCA
TTGCTGGCAATGGTATTGTTCTCTGGATCGTTACAGGACATCGCAGCATG
AGGACGGTCACAAATTACTTCCTGCTGAACTTGAGCATCGCCGACCTGCT
GATGTCGTCGCTGAACTGCGTCTTCAACTTTATATTCATGCTGAACTCAG
ATTGGCCATTCGGTTCGATTTATTGCACAATCAACAATTTCGTGGCCAAC
GTCACGGTCTCTACGTCGGTCTTCACGCTCGTGGCCATAAGTTTCGATAG
ATACATCGCCATTGTGCATCCGCTGAAACGCCGCACGTCGCGTCGGAAGG
TGCGCATCATCCTGGTCCTGATCTGGGCACTCAGCTGTGTGCTGTCGGCG
CCATGTCTGCTCTACTCCAGCATCATGACCAAGCACTATTACAATGGAAA
ATCGAGGACAGTCTGCTTCATGATGTGGCCAGATGGACGATATCCCACTT
CTATGGCGGATTATGCATACAACCTGATCATCCTGGTACTGACCTACGGC
ATTCCCATGATTGTGATGCTCATATGCTACTCTCTCATGGGTCGTGTCCT
GTGCGCAGTAGATCAATCGGCGAGACACGGATCGCCAGATGGAGTCGATG
AGTCGAAGCGGACGTGTGCGCATGTTATGCCATCGTGTCATCTTTGCATT
GCTGGCTGCCGTATCACCTGTCTCATCTACGCTACCACACAACCAGTGGC
ATCACGAGTACGTGCACATATGTATCTCGGATCTACTGGCTGGCAGTCAT
GCTTGTCATCCGCTCATTACTACTGGATGAATAAAAGGTCC
FMO08191.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TkR86C-RB | 3223 | CG6515-RB | 950..2057 | 9..1089 | 4815 | 97.2 | Plus |
| TkR86C-RA | 2659 | CG6515-RA | 539..1646 | 9..1089 | 4815 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10741416..10741632 | 550..334 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 10750098..10750279 | 190..9 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 10741830..10741976 | 337..191 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 10741189..10741326 | 685..548 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 10739072..10739286 | 971..767 | 605 | 93 | Minus |
| 3R | 32079331 | 3R | 10739428..10739508 | 766..686 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:48 has no hits.
FMO08191.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:20 Download gff for
FMO08191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takr86C-RB | 943..2059 | 1..1091 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:58 Download gff for
FMO08191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takr86C-RA | 532..1648 | 1..1091 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:06 Download gff for
FMO08191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TkR86C-RA | 532..1648 | 1..1091 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:06 Download gff for
FMO08191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10750098..10750286 | 1..190 | 97 | | Minus |
| 3R | 10739428..10739508 | 686..766 | 100 | <- | Minus |
| 3R | 10741189..10741323 | 551..685 | 100 | <- | Minus |
| 3R | 10741416..10741629 | 337..550 | 100 | <- | Minus |
| 3R | 10741831..10741976 | 191..336 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:58 Download gff for
FMO08191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6565150..6565230 | 686..766 | 100 | <- | Minus |
| arm_3R | 6566911..6567045 | 551..685 | 100 | <- | Minus |
| arm_3R | 6567138..6567351 | 337..550 | 100 | <- | Minus |
| arm_3R | 6567553..6567698 | 191..336 | 100 | <- | Minus |
| arm_3R | 6575820..6576008 | 1..190 | 97 | | Minus |
