FMO08192.5prime Sequence
1146 bp (1018 high quality bases) assembled on 2010-03-10
> FMO08192.5prime
CAGTCGACATGGACGATTTGGATGCTCTATTACCCGACCTGCAAAACAGT
GTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACTGTCCAGCC
CAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACACTCCAGGTT
ATGGAAGTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAGAGCACTAC
AGCGTAGAGACACGCTCCCCAACGGCTGGACATGATTTTAATGGCTCCTC
CACGACTCCGGGATACGCTAACCAGGGATCGTTGCCACGTCAGGCGGCGG
GTGCAAGCACAGGACTCTCAGAACTGGACTCCTTGCTGCAGGATCTGCAG
AAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAATACAATAC
GATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGACAGCCTGC
TGAAAGAACTGGACAATGCTCACATCTATGCTGTTCCTAACGGATCTGCG
CATAAATCTCCGACGCCGGGACGACATGTCACCATCACCGTTCGGGAAAC
GAAGACGGAGAAGTTGACGGGTCCGGATGGACCAGTTGGCACTGTCGAGG
AGCAAATTGTGCAGCAGAAGGATTCTTATACGCCCAATCATGCTGTTCCG
GGACAACAGGTGCATCAGGCCTATACGTCGCAGGCCACCAAGGAACTGGA
TGATCTGATGGCTTCACTTTCCGACTTCAAGGTTAGCAACGGAACAAACG
GCATCGGAAACGGCAGTCATCCGCAACAGCACTCGTCGACAGTGCAGCAC
CAGACGGTAACCGACTACGCCAGACCAAACAAGGGTAGCCAGCAGGCACA
TCTCACCCAGACGATCGAGGAGACGACCATCGTCGAGGACAGTCGCGAGG
ATCAGTTGGATTCTATGCTAGGCATCTACAGGCCATATGAGTCGCCAAGG
AGTCAATACCGTGCAGAAGGCTGCTGCATGCCTGCGAAAAGCCCATTGTG
GGCCAGGTGATCACAGCCCTGGGCAAAACATGGCATCCCGGAACACTTCA
CGTGCAACCACTGCAGCCAGGAGTTGGCACCCGCAATTCTTTCAAGGCGA
ACGCTTCCCGTACTGGAAGCCGAATACACAATTGTTCAGCCGGCTG
FMO08192.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-RC | 2377 | CG31794-RC | 374..1519 | 4..1141 | 5275 | 97.9 | Plus |
| Pax-RK | 2255 | CG31794-RK | 239..1369 | 19..1141 | 5215 | 98 | Plus |
| Pax-RJ | 2253 | CG31794-RJ | 265..1395 | 19..1141 | 5215 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19404287..19404688 | 1122..726 | 1500 | 95.5 | Minus |
| 2L | 23513712 | 2L | 19410248..19410414 | 351..185 | 820 | 99.4 | Minus |
| 2L | 23513712 | 2L | 19410480..19410648 | 185..17 | 815 | 98.8 | Minus |
| 2L | 23513712 | 2L | 19409402..19409552 | 733..583 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 19409769..19409910 | 493..352 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 19409612..19409704 | 585..493 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6814 | 14..128 | 124 | 62.2 | Plus |
FMO08192.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:21 Download gff for
FMO08192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RC | 200..1337 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:57 Download gff for
FMO08192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RC | 372..1509 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:12 Download gff for
FMO08192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RC | 372..1509 | 1..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:12 Download gff for
FMO08192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19410480..19410643 | 22..185 | 99 | <- | Minus |
| 2L | 19404275..19404682 | 732..1132 | 95 | <- | Minus |
| 2L | 19409404..19409549 | 586..731 | 100 | <- | Minus |
| 2L | 19409612..19409703 | 494..585 | 100 | <- | Minus |
| 2L | 19409769..19409910 | 352..493 | 100 | <- | Minus |
| 2L | 19410248..19410413 | 186..351 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:57 Download gff for
FMO08192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19404275..19404682 | 732..1132 | 95 | <- | Minus |
| arm_2L | 19409404..19409549 | 586..731 | 100 | <- | Minus |
| arm_2L | 19409612..19409703 | 494..585 | 100 | <- | Minus |
| arm_2L | 19409769..19409910 | 352..493 | 100 | <- | Minus |
| arm_2L | 19410248..19410413 | 186..351 | 99 | <- | Minus |
| arm_2L | 19410480..19410643 | 22..185 | 99 | <- | Minus |
