FMO08195.5prime Sequence
1082 bp (985 high quality bases) assembled on 2010-03-10
> FMO08195.5prime
CAGTCGACATGGAAGCCCGGCCAGCGAAACGCTCCACAGCGGCCTCCGTC
TTCCGGTCGCATCACATGCCGCGGGAGTCGGATCTGGTGGACATCGGCAG
CGATGCCTCGCTGTACTGCGGCTCCGACGGGGAGTCCAGTCAGGCCCAGT
CCACATCCACATCCACTCCGAACCCGCAAACGAGTTCCGACCAGGATCTG
GACCAGCCTCAGCCAACACCTCGCGCGGCACCGAGAGCATCGGCCTCCAA
TAATCCGCCAACACCCAAGCCACGACAGGCTATCAGGTCATCAAAAGTGC
TTCCAAGTGCAAACTCCACGCTGTCACGATCCAGACAGCGGCTCATCAAA
GTGGACTTCTCCAAGTTTCAGGACGACGATCTCTTCTACGATGAGAACAG
CATCAGCAGCTCCCACTCCACAGCGGCCACCCACCAGCATCATCCACATT
TCGCCGAGATGCACCGCTGCTCGCAGCCCAAGATGCCGCCGTATCCATTC
GGTGGCTACATGGTGCCCAGTCAGGCACGACAAGATTGCCGGGAGACGGC
GTCGCTGATGCGGCCCCGACGCACAATGGAGCCAGCAAAGCAGGTGCCGC
CTCCAGAAGAGCCATCCTTCACGAAGGACGAGTACCACAAGTTCTACGAC
ACGGCCCTGGAATCCTACGACCTGGCCACTCAGTGCGAGTCGAGGAGGGC
TTCCTTGCGCCGCCACACCATCGTTGGATGCCAGAGCAACCTGGACGAGA
CGCACTCAATGCCGCCCACGCGGCCCGAGTCGCGTCAATCGGACGACGTC
AGCAAGGAGACGCCTAAGAGAAGTCCTGCGGAGCAGACCCATCCCTCAGA
CGAGGGCAGTTCAACATCCTCGCTTGGGCCATGCACAAGTCCTTCATGAC
AACAGACGTGATGGACGGGTGACGATCGGCTGTCGTAACGCTGGCGGAGA
TCGTTCACATCCGTCGTCATGACAGCGGACTGGAGGCCTGCCGATGACGG
CGCGTCAGGAGATGTGAAAGCGTCCCGCTGCTTCTGTGCTGCCCTCGATT
CTCGTTCTTCGTCTGGGCATCATGCAAGTGGC
FMO08195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spir-RC | 3437 | CG10076-RC | 342..1420 | 8..1061 | 4745 | 97.4 | Plus |
| spir-RF | 4875 | CG10076-RF | 2069..2858 | 297..1061 | 3300 | 96.5 | Plus |
| spir-RA | 4881 | CG10076-RA | 2075..2864 | 297..1061 | 3300 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20342192..20342481 | 8..297 | 1450 | 100 | Plus |
| 2L | 23513712 | 2L | 20343740..20343947 | 369..576 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 20345525..20345670 | 664..809 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 20345904..20346067 | 808..964 | 480 | 93.3 | Plus |
| 2L | 23513712 | 2L | 20345173..20345259 | 577..663 | 435 | 100 | Plus |
| 2L | 23513712 | 2L | 20343597..20343673 | 296..372 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:44 has no hits.
FMO08195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:10 Download gff for
FMO08195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RC | 340..1303 | 8..964 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:00 Download gff for
FMO08195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RC | 342..1305 | 8..964 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:14 Download gff for
FMO08195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RC | 342..1305 | 8..964 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:14 Download gff for
FMO08195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20345906..20346087 | 810..979 | 92 | == | Plus |
| 2L | 20342192..20342481 | 8..297 | 100 | -> | Plus |
| 2L | 20343599..20343672 | 298..371 | 100 | -> | Plus |
| 2L | 20343743..20343947 | 372..576 | 100 | -> | Plus |
| 2L | 20345173..20345259 | 577..663 | 100 | -> | Plus |
| 2L | 20345525..20345670 | 664..809 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:00 Download gff for
FMO08195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20342192..20342481 | 8..297 | 100 | -> | Plus |
| arm_2L | 20343599..20343672 | 298..371 | 100 | -> | Plus |
| arm_2L | 20343743..20343947 | 372..576 | 100 | -> | Plus |
| arm_2L | 20345173..20345259 | 577..663 | 100 | -> | Plus |
| arm_2L | 20345525..20345670 | 664..809 | 100 | -> | Plus |
| arm_2L | 20345906..20346087 | 810..979 | 92 | == | Plus |
