FMO08202.5prime Sequence
1113 bp (961 high quality bases) assembled on 2010-03-11
> FMO08202.5prime
CAGTCGACATGACCACCAGCAGTGAGGACGTGCTGCTCCAGATGGGCGAG
GTGCGGTACAAGAAGGGCGACGGCACGCTCTACGTAATGAATGAGCGTGT
GGCCTGGATGGCGGAACACCGGGACACGGTAACAGTCTCCCATCGTTATG
CGGATATCAAGACTCAAAAGATATCTCCTGAGGGCAAGCCCAAGGTGCAG
CTGCAAGTGGTTCTTCACGACGGCAACACATCGACCTTCCACTTCGTCAA
CCGCCAGGGACAGGCCGCAATGCTTGCCGACAGGGACAAGGTCAAGGAGC
TATTGCAGCAACTGCTTCCTAACTTCAAGCGGAAGGTGGACAAAGACCTG
GAAGACAAGAACCGCATCCTTGTTGAGAATCCCAACCTGCTGCAACTCTA
CAAGGACCTTGTCATAACCAAAGTCCTAACCAGCGATGAGTTCTGGGCTA
CGCATGCCAAGGATCACGCCCTTAAGAAAATGGGCAGATCCCAGGAGATC
GGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGCCGCAGACAGACGGCTG
TAATGGCCTCAAGTACAACCTCACCTCTGATGTGATTCACTGCATTTTCA
AGACCTATCCCGCCGTTAAACGCAAACATTTTGAGAATGTGCCTGCCAAA
ATGTCCGAGGCCGAGTTTTGGACCAAGTTTTTCCAATCACACTACTTTCA
TCGTGACAGACTGACAGCCGGCACAAAGGACATATTCACGGAGTGCGGCA
AGATCGATGACCAAGCATTAAAAGCGGCTGTTCAGCAGGGAGCTGGTGAT
CCTTTGCTAGACCTAATAAAGTTTGAGGATGTTCCTTTAGAAGAGGGCTT
TGGCAGCGTAGCAGGGGATCGCAACGTCGTTAACAGCGGGAATATTGTGC
ACCAAAACATGATCAAGCGATTCATCAGCATTCCATCATGGAGCTTAAGA
CCTGTGCTAACGTGACCTCACGCCGTCAATATGACCAATGGAAACAATAA
TGCCACCGGCCTGTTTCCCAATCCAGTATTACGACGAATGATGTAATGGC
CCAGTCACGGTCACGCGACGAAAGTCCCTCGATCGTGAACAAGACAAACC
GTAGGATAGCATA
FMO08202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tfb1-RD | 2018 | CG8151-RD | 140..1159 | 9..1024 | 4835 | 98.5 | Plus |
| Tfb1-RA | 2145 | CG8151-RA | 267..1286 | 9..1024 | 4835 | 98.5 | Plus |
| Tfb1-RC | 2022 | CG8151-RC | 144..1163 | 9..1024 | 4835 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14363972..14364499 | 501..1024 | 2290 | 97.3 | Plus |
| 2R | 25286936 | 2R | 14363576..14363916 | 163..503 | 1690 | 99.7 | Plus |
| 2R | 25286936 | 2R | 14363360..14363513 | 9..162 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:24 has no hits.
FMO08202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:58 Download gff for
FMO08202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb1-RA | 267..1296 | 9..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:02 Download gff for
FMO08202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb1-RC | 144..1173 | 9..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:43 Download gff for
FMO08202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb1-RC | 144..1173 | 9..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:43 Download gff for
FMO08202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14363360..14363513 | 9..162 | 100 | -> | Plus |
| 2R | 14363576..14363914 | 163..501 | 99 | -> | Plus |
| 2R | 14363973..14364509 | 502..1034 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:02 Download gff for
FMO08202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10250865..10251018 | 9..162 | 100 | -> | Plus |
| arm_2R | 10251081..10251419 | 163..501 | 99 | -> | Plus |
| arm_2R | 10251478..10252014 | 502..1034 | 96 | | Plus |
