FMO08203.5prime Sequence
1090 bp (998 high quality bases) assembled on 2010-03-11
> FMO08203.5prime
CAGTCGACATGCTGCAGTACCAGCAACCGCAACAGCAACAACAACAGCAA
CAGTTACTGCAACAGGAGCAGCAACAGCAACTGCAACAGCAACAGCAGCA
GCATCAGCATTTACTGCAGCAACAGCTGCCACAGCAGCGACGTCAAACGT
ACAAGGAATACTTGCAACAGCATCAGCAGCAAAAGCAACAGCAACAGCTG
CAGCAACAGCAACAGAACAACCAGCCCCTGCGGATATTCCGCGTCCACTA
CATCCGCCTGAATTCTAAGGACGGCGTACCGTCCCTCAACCAGCAGGTCA
ATGGTTACCCCAATGGATCCCCAAATGGCTCCAAAATGAAGACCATAGCA
CCGAATATCCGCCGACGGCGTCGATGCGATAAGCACCATTTGGAGCTCTA
CTGCAATGAGACCACCACGCCGCCCACAAATGTGCCCACTAATACCAGTG
GCGGCAGCGGCAGCAGCAGTAATCAGTTGAAGCCCGGCGGCCTGAGGATT
CGGGAATGCATTACTGCACCGAGTACGGCGGCCAGTTCGCCGGTGGACGA
GCACATGTGCATCCCGGCACCGCCCATCACACCGCCGCCGGCCTTCCTCA
CCGAGGGCTACAAACGGTCGAGCACTTCGGTCTCCACATCGGCTTTGCCC
AGTGCCACCAGCAGCCAGGAGACCCAGACGCAGAGCCAGACCCAGAGCAG
TACACAAACCCGGACCCACAACCAGAATCACATGCAGTGTATGAAACCGA
ACCTGATACGCCAGCAGAAGCCATTTCCCGTAGTTGCCAAGCCACTGGGT
CCGCAGAAGCCCAGGACGACGGCCACCATTGCGGTCACGTTGAACAGCGT
GCTCCAACAAGCCACGTGCCACGGTCAAGAGGAGTTTAGAACCAAGAAAG
ACAGACTGATGCACAACACAACAACACGGAGGCAATGGCACATATCCACG
CCCAACATCGAGCAGCCACCTGCATGCTCGATGCTGCCGCCCCCGGAGGC
GGTGTGCATCACCCAGGTGACGGGAGTGCAGATGAACGTCAACCGCTCGC
GGGCCATAGCTGACCGTCCGGGTCAACCTCTCATACAACG
FMO08203.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-RB | 4202 | CG32264-RB | 1655..2681 | 9..1028 | 4825 | 98.6 | Plus |
| CG32264-RJ | 2609 | CG32264-RJ | 940..1088 | 888..1028 | 455 | 91.3 | Plus |
| CG32264-RG | 2418 | CG32264-RG | 749..897 | 888..1028 | 455 | 91.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3741996..3742875 | 889..9 | 4355 | 99.9 | Minus |
| 3L | 28110227 | 3L | 3723726..3723857 | 1028..903 | 275 | 89.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:17:06 has no hits.
FMO08203.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:59 Download gff for
FMO08203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RB | 1735..2776 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:29 Download gff for
FMO08203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RB | 1648..2689 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:48 Download gff for
FMO08203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RB | 1648..2689 | 1..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:48 Download gff for
FMO08203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3723748..3723872 | 890..1004 | 91 | <- | Minus |
| 3L | 3741996..3742880 | 1..889 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:29 Download gff for
FMO08203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3723748..3723872 | 890..1004 | 91 | <- | Minus |
| arm_3L | 3741996..3742880 | 1..889 | 99 | | Minus |
