FMO08204.5prime Sequence
1089 bp (986 high quality bases) assembled on 2010-03-11
> FMO08204.5prime
CAGTCGACATGTGCGATACCAAAGACGATGCGCAGAAATGGAAATGTGAA
ACTTGCACCTACGAGAACTACCCATCCTCGCTGAAATGCACCATGTGCCA
GGCGTCCAAGCCGCTGCTCAACGAGGACATCTTCCGTCTGAGTCCAGCCC
AGGAGAGCTGCACCGTTGCGGAGGAGGCGGCTGCCGTCGAAGTAGCCGTA
ATGTCGCCCACACCTTCGTCCACGTGCTACTCGCTCCAGCCGCAGAGCCA
GGCACGGCAGAGCAACGTGGCGGACAGCGAAAAGTGGCCCTGCAAGGTGT
GCACCTATCTCAATTGGCCGCGGAGCCTGCGCTGCGTTCAGTGCTGCACG
AAGCGCGGTGGCGAGGCGATAGAGCGTGGCAAAAAGGACATGGATAACGA
GGCGGACGGGGATCGTGCAGGAGAGGCGCTGCAAGCCCTTCGCATCAGCG
GCTCGGAGGAGAACCTGGCCAATAAGCCGGTTCAGCTCATCGGCGCCACG
GCCTCCCATCGTTTGAGCCTTAGTCGTGGCATAGACGATGCGACCCATCT
GAACAATCTCGCCAATGCGTCTCACAACCAGTCGCAGTCCCAGCACCGGC
AGCCTGTCCTACAGCAGCAGATGCAGCTCCAGCTGCAGCCGCAGCAACAG
CGGGAATCCTCATCCTCCGCCGCCGTCCCGCCGCAGCAGCAGAAGCAGTG
CTATGTCTCCAAATGGGCGTGTAACTCTTGCACTTACGAAAACTGGCCGA
GGAGCATCAAGTGCTCCATGTGCGGCAAGACGAGGGAGCGGGAGATTAGT
GGGTCGCAGAACGACTTGCACGCCTCATCCAGCCTAAACAGTCAGGAGGA
GAATCAGCACAACTGCAGCAGCCAAACGTGGATACCGTCAGCGTCAATAA
CTCGTTCAATAAGAAGCACATTTACCAACTGGGTTCTTCGGAAACATCAC
ACTGTGATACGCTGCAAGAGCGTCAGGACGCCGCCAGCGTCAAACCGACG
GACGGTGGACTGCAGTGGCTGATGCCTGCCTGGCGTCTGGAAAAACTACG
GCGCTGTGGAGGTACTCTTCCTGGGGTGGTATCAGCGGT
FMO08204.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-RA | 3679 | CG9448-RA | 591..1656 | 9..1062 | 4955 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9708736..9709325 | 725..136 | 2950 | 100 | Minus |
| 3R | 32079331 | 3R | 9708466..9708675 | 934..726 | 1000 | 99.5 | Minus |
| 3R | 32079331 | 3R | 9709388..9709515 | 136..9 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:27 has no hits.
FMO08204.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:01 Download gff for
FMO08204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-RA | 578..1664 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:13 Download gff for
FMO08204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 583..1669 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:30 Download gff for
FMO08204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 583..1669 | 1..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:30 Download gff for
FMO08204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9708468..9708675 | 726..932 | 99 | <- | Minus |
| 3R | 9708736..9709324 | 137..725 | 100 | <- | Minus |
| 3R | 9709388..9709523 | 1..136 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:13 Download gff for
FMO08204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5534190..5534397 | 726..932 | 99 | <- | Minus |
| arm_3R | 5534458..5535046 | 137..725 | 100 | <- | Minus |
| arm_3R | 5535110..5535245 | 1..136 | 97 | | Minus |
