FMO08205.5prime Sequence
759 bp (-87 high quality bases) assembled on 2010-03-11
> FMO08205.5prime
CAGTCGACATGAACATCCGCATGGGCACAAAGGGCAAGCGTCCCCTGCGG
AGCCTGACGCCCCGCGACAAGATCCATGCCATCCAGAGGATCCACGATGG
CGAGTCCAAGGCCTCGGTGGCCAGGGACATCGGCGTGCCCGAGTCCACGC
TGCGCGGCTGGTGCAAGAACGAGGACAAGCTCCGCTTCATGTCCCGCCAG
TCTGCCACGGATAACCTCTGCGCCGACGCCCTGGGCGATAAGATGGATGG
AGGAGGAGGAGGAGGTGGTGGAGATTACGCTGCTGCTTAGACTAGTTCTA
GTCGACCATGAAGATCAAGATCATTGCCCCGCCAGAGCGCAAGTACTCTG
TCTGGATCGGTGGCTCCATCCTGGCTTCGCTGTCCACCTTCCAGGAGATG
TGGATCTCCAAGCAGGAGTACGACGAGTCCGGCCCCTCCATTGTGCACCG
CAAGTGCTTCTAAGAAGGATCGCTTGTCTGGGCAAGAGGATCAGGATCGG
GATGGTCTTGATTCTGCTGGAGGAGGAGGAGGAGAAGTCGAGGAAGCAGC
AGCGAAAGTGCAAGTGCGAGTGGTGGAAGTTTGGAGTGCACCACACCAAA
ATCGACAACAACACCACTACAAGATGAAAAGAGCGGAACCTGCTGCCCCC
CATCATCACTATCATCATCGTTTTGGGCGCATGTTGTGTGGTTCCAGCGT
ATTATATAATTATTTATTCCCCATGAGAATGATATGATATACTATGTATT
TTTTGATTC
FMO08205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act5C-RE | 2863 | CG4027-RE | 1130..1588 | 301..755 | 2045 | 96.9 | Plus |
| Act5C-RD | 1928 | CG4027-RD | 1130..1588 | 301..755 | 2045 | 96.9 | Plus |
| Act5C-RC | 2252 | CG4027-RC | 1130..1588 | 301..755 | 2045 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5903666..5904124 | 301..755 | 1945 | 96.9 | Plus |
| 3R | 32079331 | 3R | 25189937..25190203 | 7..273 | 1335 | 100 | Plus |
| 3L | 28110227 | 3L | 21986681..21986844 | 301..464 | 640 | 92.7 | Plus |
| 3R | 32079331 | 3R | 13427572..13427735 | 301..464 | 610 | 91.5 | Plus |
| 3R | 32079331 | 3R | 15441646..15441808 | 302..464 | 560 | 89.6 | Plus |
| 3R | 32079331 | 3R | 25138255..25138448 | 7..200 | 445 | 82 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:24 has no hits.
FMO08205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:02 Download gff for
FMO08205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RD | 1127..1587 | 301..759 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:48 Download gff for
FMO08205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RA | 1130..1590 | 301..759 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:04 Download gff for
FMO08205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RC | 1130..1590 | 301..759 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:04 Download gff for
FMO08205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5903666..5904126 | 301..759 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:48 Download gff for
FMO08205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5797699..5798159 | 301..759 | 96 | | Plus |
