FMO08207.5prime Sequence
1087 bp (960 high quality bases) assembled on 2010-03-11
> FMO08207.5prime
CAGTCGACATGTGTGCCGCCCAGAATCCGCCGCCCTTCGGCTATACCTGG
GGTTTTGCGGACAACGGCAACCGCGCCGCCGAATCGGTACTGGAGATATC
GCCCAACATCAACTATACAGTCAGCGGGGAGTCGATGCCCTATCTACTAT
CGACGGATGGATCATTGGCAGTTCAAAAGGATGTCAAAGGCCTTACAGCT
GGCGGCAAAAATAATGTCGTTCGTCGTATGTTCGTCGTAAACGATCCTTC
ATTTCCGCCTGGAACACAAAGAGTTATCACTGCCGGCGGAGCATCGACGG
TGGTCAAGAAGCAGGACAACAATCAGCAGGTCCTGAGCCTCGACAAGAAC
TGTGACATACTTCCTGGTATTTCAGTTCAAGTGCAGAAAGTCATACAAGG
ACTGGAGGATAACGAGGACTCGCAAGGCGAAGCACCCAACCTAAAGTTGG
AGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGGAATCAATG
CATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCGTACAGTTG
CGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGACAACCCACG
CACGCGTGCACACAGGTGAACGCCCCCACATCTGCACCCATTGCGGCAAG
AGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTTCACTCCAC
GGAGAGACCTTATCAGTGCCAGGAGTGCAAGAAGAGCTTCACCCTCAAGC
ACCATCTGCTGACCCATTCGCGGGTCCATAGCCGGGAGCGACCATTCGTC
TGCCAGGAGTGTGACGCGCATTTCCGCTTAAGCGACACCTGGTCACGCAC
AGCAAGTTCCACGCCGGCTGACGACCATATGTATGCGAGGATGTGTGAGA
GCTTTGCGCAGGAAACCACCTGATTATGCACTCTCGCTTCACGGTCATGA
ATCCATTTGTTTGCCCCGATGCGAGCTTCGTTTCCACGCAGGTTTCATTG
TTTACCACGACGTTATTCAAGCAGATTCCCATTCGGGCACGATGCGCAAG
AGTTCTACAAAGCGAGCTAGTTACGAATGGAGGCGGT
FMO08207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cg-RA | 2881 | CG8367-RA | 578..1663 | 9..1072 | 4740 | 97.1 | Plus |
| cg-RD | 3058 | CG8367-RD | 755..1840 | 9..1072 | 4740 | 97.1 | Plus |
| cg-RC | 2866 | CG8367-RC | 578..1648 | 24..1072 | 4665 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14178267..14178596 | 611..936 | 1420 | 98.2 | Plus |
| 2R | 25286936 | 2R | 14177861..14178021 | 352..512 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 14176405..14176542 | 134..271 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 14174447..14174572 | 9..134 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 14178098..14178203 | 513..618 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 14176610..14176693 | 270..353 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:34:22 has no hits.
FMO08207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:03 Download gff for
FMO08207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cg-RA | 593..1614 | 9..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:42 Download gff for
FMO08207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cg-RD | 755..1776 | 9..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:51 Download gff for
FMO08207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cg-RD | 755..1776 | 9..1019 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:51 Download gff for
FMO08207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14178098..14178200 | 513..615 | 100 | -> | Plus |
| 2R | 14176612..14176691 | 272..351 | 100 | -> | Plus |
| 2R | 14177861..14178021 | 352..512 | 100 | -> | Plus |
| 2R | 14174447..14174572 | 9..134 | 100 | -> | Plus |
| 2R | 14176406..14176542 | 135..271 | 100 | -> | Plus |
| 2R | 14178272..14178596 | 616..936 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:42 Download gff for
FMO08207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10061952..10062077 | 9..134 | 100 | -> | Plus |
| arm_2R | 10063911..10064047 | 135..271 | 100 | -> | Plus |
| arm_2R | 10064117..10064196 | 272..351 | 100 | -> | Plus |
| arm_2R | 10065366..10065526 | 352..512 | 100 | -> | Plus |
| arm_2R | 10065603..10065705 | 513..615 | 100 | -> | Plus |
| arm_2R | 10065777..10066101 | 616..936 | 98 | -> | Plus |
