FMO08208.5prime Sequence
1092 bp (935 high quality bases) assembled on 2010-03-11
> FMO08208.5prime
CAGTCGACATGGATATCCTACCGAGTGGCAACATCTTCAGCGAGCTGGAG
CGGATCTGCACCACCGGCTACTACTCGTCGCAGCCGTCGATTGAGGATCA
ATGGCAACAGACCTGCTACGAACTGGAGCGCTATCTGCGGGATGAGCCCA
AGCTGCAGAAGAAGATGCACAGCAATCTGGACAATCCGTGGGACATATTC
TCCACACCCGCCCGCCTGCTCGAGGAGCTGAAGATCAAGGAGCAGCACCT
GGACACGATCTCGACGACCTCCTCGGTCTCGTCCAACTGCTCGGGCACCT
CCTGGGACAGCAATGGTTCCCAGGCACTGAGCTGCTCGGTGCTGGTCAAG
CAGGAGCGGATCGACGAGGAGGACGACGATGTGGGCTGTGACGACAAGCT
GAGCGTGCTGCTCGCAGCTCCGCCCTCGGCCATCTCTCCCAATCCCAGCA
TCGGCAGTGCGGGCAACATGACGCCCACCAGCATCAGCAACAGCAGCAGC
ATCAGCAGCAGCAATAGCCACAGCAATAGCAACGGCAACACCACCGGCAG
CAGCAACATCATCGCCAGCCCGCTGAGCAGTCTGGGCAGTGGCAGCACCA
TCACAGTGAGTTCCCGCAACAGTTCGGCGCCGGGCATCAAGGTGCGCGTC
GTCCAGGCCAAGAATCACCCGGGCAGCAATGCGAGAATGCACCTGGGGCA
TGTCCAGGACTTTGTGTTGCCCACGCTCACGCCCGCCCTCTTCGCCAGAG
TCCAACCTGCGCAGCCACAATTACGCCCAGCAGCTGGAGGCCAACGATTT
GGCTGCACTGATACAGCAGCAGCAGCAACAGCAACAGCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCTCAATCAACAGCCCGGCAACTCCACAACCGCT
ACAGCAATCCTGCGCTTCACCAGCCAGAAGCATCCCAACAATGCAGCAAC
TGCAAGCAGCAGCAGCAGCCAGCTGGCCGTCCAGCATTGGAGTCATATCC
GCCACAGGCCCTGGCCACAGACACATCGGGCAGCATTCGCCCAAAAGCAC
CGCAGCGTAGCCGCCACAGCCGCAATTGCGCAGGTTGACTGC
FMO08208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| luna-RC | 8446 | CG33473-RC | 1392..2456 | 9..1076 | 4845 | 97.6 | Plus |
| luna-RD | 3037 | CG33473-RD | 821..1885 | 9..1076 | 4845 | 97.6 | Plus |
| luna-RB | 3608 | CG33473-RB | 1392..2456 | 9..1076 | 4845 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10990191..10991127 | 1049..108 | 4110 | 97.5 | Minus |
| 2R | 25286936 | 2R | 11099532..11099633 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:08:16 has no hits.
FMO08208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:04 Download gff for
FMO08208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 364..1411 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:37 Download gff for
FMO08208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 1385..2432 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:04 Download gff for
FMO08208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 1385..2432 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:04 Download gff for
FMO08208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10990183..10991124 | 111..1056 | 97 | <- | Minus |
| 2R | 11099532..11099639 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:37 Download gff for
FMO08208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6877688..6878629 | 111..1056 | 97 | <- | Minus |
| arm_2R | 6987037..6987144 | 1..110 | 96 | | Minus |
