FMO08210.5prime Sequence
1014 bp (884 high quality bases) assembled on 2010-03-11
> FMO08210.5prime
CAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACACCGGCAAG
TCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTGCTAAATGC
CGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATTGCTGAAGA
ATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACACTCGAGGTG
ATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACCGAAAAGCA
GGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCTTCTCATCG
AGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAGTGTGCATG
CAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAACAAGGGTTG
GCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAATAGCGATA
CAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCAAAAATCTC
GATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTGCCCGATGA
AGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATCCATTGTAA
ACCTCTTGGATATGGGAAAAGTCTGTGCTGAGCACGGCAGATTACCACGT
GGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGCAAAAGAC
TGAATAATCTCTGGGCGACTATTATGGCAAGGGCAACGAAGTGGACGAGA
AACTGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTATCAACCACC
TGACGATCCCATCAGCTGACCGACTTTCTCATGACTCCCTCCATCAGTTT
GATGCCCATTGCCTTGCTGGCTCTTCAGGAATCTTACGCTTTGCAAGCGA
TATCACCTATTCCGGATGGTGTATGAAGCTGACATATGTCTATCCGATGT
TTCACAACAAGTACAAGCACGCTGTTTACTGACGTATTCTTTCTTGACCT
CACCCATTGGCCGA
FMO08210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2875-RA | 1713 | CG2875-RA | 118..1145 | 9..1012 | 4335 | 96.4 | Plus |
| CG2875-RC | 1975 | CG2875-RC | 118..1142 | 9..1012 | 4280 | 96.1 | Plus |
| CG2875-RB | 1710 | CG2875-RB | 118..1142 | 9..1012 | 4280 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3572595..3573304 | 851..146 | 3255 | 99.2 | Minus |
| X | 23542271 | X | 3573368..3573505 | 146..9 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:43 has no hits.
FMO08210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:53 Download gff for
FMO08210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RA | 116..992 | 9..879 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:54 Download gff for
FMO08210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RA | 118..994 | 9..879 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:08 Download gff for
FMO08210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RA | 118..994 | 9..879 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:08 Download gff for
FMO08210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3572503..3572532 | 852..879 | 93 | <- | Minus |
| X | 3572595..3573303 | 147..851 | 99 | <- | Minus |
| X | 3573368..3573505 | 9..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:54 Download gff for
FMO08210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3466536..3466565 | 852..879 | 93 | <- | Minus |
| arm_X | 3466628..3467336 | 147..851 | 99 | <- | Minus |
| arm_X | 3467401..3467538 | 9..146 | 100 | | Minus |
