FMO08211.5prime Sequence
871 bp (-85 high quality bases) assembled on 2010-03-11
> FMO08211.5prime
CAGTCGACATGGAGACGCCCGTCGAGGAGCACGGCATGGACCTGACCAAG
GTGTCCGTGGTGCGCTCCGCCAAGGGCGTGGATATGCTCTGCCTGGACGA
CTATCTGTACCACTTCGATCGCATCGGGCGGAATAACACCTACCGATGGC
TGTGCAACAGGCGCAAGGACAAGTCCACTCCCTGCAAGTCCCGCATCTGC
ACCATGCTGCCCGATCCGCTGGACAAGACGCGCCACGTCGTCGTGGACGT
CGTTCTGGCCCACATCCACCCGCGCTGCAGCGATCACGAGGTCAACAAGG
TGGCCCAGCGCAAGCGGCTCTCCGTAATGATGATGAACGACGCTTACAGC
ACCACCCAGCCGAAGAGAGCTCGTCTGTGCGAGCGCGCCAACGCCGGCAT
GAATCCGCCGGAGTTCATCTACGGAAGCATCGACACCTCCACCGTGGAGG
CCTCGTTCCAGTTGGACTTTGAGGACAAGGATCGTGTGTACATGCTACGG
CGCCGCGACGGCCGCGTGATGGTCTGCATCGACGGGCATCTGTACTACCT
GGCCGGGAAATCCTACAAGGGCGACATATTCCGATGGACCTGTGTGCGCA
AGCGTGACATTGAGTGCACGGCCAGGATCTGCACGGAGGCGACTTTGGCG
GGGGCACATCGCCTGCATGCCGTCGACACGGATGCGCACATTCATCCGCA
CTACTCGGCCGCAAGCTGATGCACATTGTTTACGAAGCACCAAATCGTGT
GATGGAGGACGAAATACCTCTGATGTGCTGCAGAGTGCCCAATCTGAGTA
CTCGATCCGGAAAACACTTTCGACACAGCTCACGGGGCGATGACTGCATT
CATAATATCGAGGATGCGAGG
FMO08211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gfzf-RE | 3608 | CG33546-RE | 339..1212 | 9..871 | 3940 | 97.6 | Plus |
| gfzf-RB | 3910 | CG33546-RB | 339..1212 | 9..871 | 3940 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7150165..7150630 | 474..9 | 2270 | 99.1 | Minus |
| 3R | 32079331 | 3R | 7149254..7149634 | 845..472 | 1430 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:08:08 has no hits.
FMO08211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:55 Download gff for
FMO08211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 310..1167 | 9..857 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:35 Download gff for
FMO08211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 339..1196 | 9..857 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:00 Download gff for
FMO08211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 339..1196 | 9..857 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:00 Download gff for
FMO08211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7149240..7149632 | 474..857 | 96 | <- | Minus |
| 3R | 7150166..7150630 | 9..473 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:35 Download gff for
FMO08211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2974962..2975354 | 474..857 | 96 | <- | Minus |
| arm_3R | 2975888..2976352 | 9..473 | 99 | | Minus |
