FMO08212.5prime Sequence
1054 bp (881 high quality bases) assembled on 2010-03-11
> FMO08212.5prime
CAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACGGGGTGCCC
GCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACAACGGCTAG
CAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGCCATCATGG
CTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTGCAAGTCCC
ATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGCAGCGATGC
CGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCAGCACCACC
AGCATCACCAGCACCACCACAATAACAACAATAACAACAACAACAACAAT
GTGGCACACAAGAGTCGCAACAGTGGTGGCGCCGTGGCACAAACAGCTTC
CGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGGACGCTGCT
CCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGCGTTTAACA
CCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGCAATTGCGA
CGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCTGTGGGATC
GCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGGGCAGACGC
ATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGGCAAATCCA
GCCCGTCGATCGCTACGCCGTCCTCATGGACATCATCCCCATGGACTCGA
AGCGGTATCGGTACGCCTACCATCGCTCCGCATGGCTGGTGGCCGGCAAG
GCGACCCGCCCCCCAGCACGCCTCTACGCCATCCTGACAGTCCCTTCAGC
TGCGAGGCGCTCCGCAACAAGTTATCTCCTTCGAGAGGTGAGCTGACTAA
TACCGAAATGGATAAGACGGACAGATCGTTTGACTCGATGCATCGCTACC
AGCCCAGAATCATTGTGGCGTTTGAGCCATGGACAGAGCATCGTGGATCA
AGGATTGGCAGGACTTGATCACAGACTTATGTATTCCCGAACGTATCCGC
GGGT
FMO08212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mid-RA | 2920 | CG6634-RA | 280..1329 | 9..1039 | 4645 | 97.2 | Plus |
| mid-RB | 2139 | CG6634-RB | 280..1329 | 9..1039 | 4645 | 97.2 | Plus |
| H15-RB | 2926 | CG6604-RB | 1031..1512 | 522..991 | 595 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5463819..5464269 | 196..646 | 2240 | 99.8 | Plus |
| 2L | 23513712 | 2L | 5465217..5465497 | 644..917 | 1045 | 96.4 | Plus |
| 2L | 23513712 | 2L | 5461918..5462106 | 9..197 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 5407693..5407817 | 522..646 | 280 | 81.6 | Plus |
| 2L | 23513712 | 2L | 5413009..5413168 | 644..803 | 215 | 75.6 | Plus |
| X | 23542271 | X | 8451685..8451770 | 661..576 | 205 | 82.6 | Minus |
| 2R | 25286936 | 2R | 23875716..23875774 | 291..349 | 205 | 89.8 | Plus |
Blast to na_te.dros performed 2014-11-28 21:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1615 | 283..374 | 146 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2491..2546 | 283..337 | 133 | 73.2 | Plus |
FMO08212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:56 Download gff for
FMO08212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mid-RA | 270..1280 | 1..997 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:33 Download gff for
FMO08212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mid-RB | 272..1282 | 1..997 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:43 Download gff for
FMO08212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mid-RB | 272..1282 | 1..997 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:43 Download gff for
FMO08212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5461910..5462104 | 1..195 | 97 | -> | Plus |
| 2L | 5463819..5464269 | 196..646 | 99 | -> | Plus |
| 2L | 5465220..5465505 | 647..924 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:33 Download gff for
FMO08212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5461910..5462104 | 1..195 | 97 | -> | Plus |
| arm_2L | 5463819..5464269 | 196..646 | 99 | -> | Plus |
| arm_2L | 5465220..5465505 | 647..924 | 96 | -> | Plus |
