FMO08213.5prime Sequence
1090 bp (988 high quality bases) assembled on 2010-03-11
> FMO08213.5prime
CAGTCGACATGAGCCACAAACGCTGCCTTGCGAACGAGGTAATCGAATTC
GTCCTGCCGGCCAATAGCGATTACTCGGACGAAGACAACCGTGGAAACGT
TCGTGTGATTAACACTAGCGATGATGCCACCTACGTGCTTCTGGACAACC
TGGGCAACGAGTTCGAAGAGGACATCATCATCGTCAATGAGAACGGCGTG
GAGAAGGAGATGCTGATGAGCAAGGAGCTGCGCGACTTTATAGTGGGCTC
CCGGGTGAAGGATTTGACGGATGACGAACAGATGCCGCAATTTGTGGTCA
GGGAATTGGATATGAGCGAAGTGGGGGATTTGGTGGAGGTGGAACCGGAG
ATGGAACAGGAGGCGGACTATGGCGACTACGGCGACTACGAGCACGAACC
TAGCTACGGCCATCCGCGCGATAACGAAAGGGTGGAAGAGGATCTGGATA
TGTATCCACCGTCGTCACCCTCGCTGCCACCATCGCCACCAAGGCCGCCG
TCGCCTGTTGTCCAGCCCGCTAGCAAAGCTAGAAATTCTGCCCGCCAGAT
CGCCTTACGTAGCTTTGTCAGCCAAAAAAACAACGACGACGATGATGGTA
GCGTGAAGGAGGTGAAGCCAAGCGAAAAGATGCTGGAGGAGTTCAAGGGA
CCGCGTCGCTACATGCTTTTCGACGACCTGATAGCCACCATTGTGGACTT
TGACGAGGATAGCACACCCCTTGTGGAGTTCTCCATGATCAGCGACATCA
TGGACGAGAAGCTGCCGGTGGAGTGCGGCATTTGCCCAGATGTGATGCAC
AAATCATAGCTGTCCAGCACCACAAGACCCATCTGGTGCCTGGCACCATC
GCTATGCTTGCATTTACTGCACGGAAACGTATCGCGACTGCAGTACTGGC
GGACATGCGCGCGCCACATGGGCATCCGTCCATACGTCTGCGACTGTGCA
CCTATACTTTCGACCAGCAGGATCTGGCGGTGCACATCACGCCGACATCT
GGGAAGGACTAATTGGCAGTGTGCGCAGAACGTCCGCCCGAAACCCAGTC
TGAGCGCATCTCGAGGGGACGCACGATAAGACGCGATCCA
FMO08213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2116-RA | 1972 | CG2116-RA | 108..1204 | 9..1085 | 4745 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8129919..8130859 | 9..943 | 4395 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 20:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 659..757 | 450..547 | 132 | 60.6 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 982..1040 | 459..520 | 113 | 71.4 | Plus |
FMO08213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:09 Download gff for
FMO08213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 189..1214 | 1..1015 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:04 Download gff for
FMO08213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 104..1129 | 1..1015 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:36 Download gff for
FMO08213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2116-RA | 104..1129 | 1..1015 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:36 Download gff for
FMO08213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8129915..8130940 | 1..1015 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:04 Download gff for
FMO08213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8023948..8024973 | 1..1015 | 97 | | Plus |
