FMO08214.5prime Sequence
1029 bp (869 high quality bases) assembled on 2010-03-11
> FMO08214.5prime
CAGTCGACATGAATGAGGAGAGCCAGTACTCCATACACACGGTGTGCCGC
ACCTGCCTGTCCACGGTGGACGACTCGGCGGCCTACGATCTGTTCCGAGT
GCCCGGTCTGGCCAAAAAGCTGTGCGTGTGCACCTCCTTGTCCGTGGAGC
AGGCGGATGGCTTTCCCAAGAACCTGTGCAATGTCTGCTTCTCCAAGCTG
AACGACCTGCACGACTTTCAGAAGCAGTGCGTCGATTCCGTTCAAAAGTT
CCAAGATCTGGTGGCCAGCAACGCGTTCGCCTGCCAAACAAACTTCGATG
TTCTGGACACCAGTGCCGCTGTGGCGGATCTGCCGGGCGAGGAAGAGGAC
AACGTGCACTTCGATCCGCTGCTCAACTCCAAGATCGAGATCATTGAGAA
CGAGGAGGACGTCTTCAAGATGCTCGAGTCCGTCGAAAAGGAGGTCGAAG
AGGTGGAGATGGAGATGGAACAGCCGTTTGGCCGAGTATCTCAGGATGAC
TCCTTCGAGAGCGGCAACGACAACGACCTCAACGCAAACTTCCAAATCAG
TAGTGACGACGACATTCCACTGGCCCAGCGCAGCCGGCGTGGAGCCACTC
GTGGTTCCAAGGCGAAGGGCAAGCCGAAGTCGGCTGCCAAGCGACAGGAG
GAGGAATCCGAGGAGTCCGAGGAGACCAGCTCATCAGACGACTCCGATGG
CAATCCGATGGACAAGCCCAAACGCAAGAGGATTCCTGCTACGGAGCGGG
ATCGCCACCGCCTGATTGACTGCCACATCTGCCACCAGAAGTTCAAGAAG
GCGATTCGCTACGAGGAGCACATGAAGCATCACAACGACTTGCTACCCTT
CCAGTGCACCGTCGAGAGTTGCGACAGGCTTTACACCGCCAATGGACTGC
GCGTCCATGTGGAGCACGCCCACACGGAAACATCGGCTATGCTTCCGTGC
ACCTTAGAAGGCTGCAACAAGTTCTTTGCCGGCGTGCTGCTAGCTCCCAT
GATACGCGTGCACAAGTGTGAACTCCCCC
FMO08214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D19B-RA | 2685 | CG10270-RA | 120..1147 | 9..1028 | 4710 | 97.8 | Plus |
| D19A-RA | 3233 | CG10269-RA | 253..600 | 117..464 | 690 | 80.2 | Plus |
| D19A-RA | 3233 | CG10269-RA | 967..1139 | 756..925 | 410 | 83.2 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 824..960 | 722..858 | 370 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6183938..6184801 | 872..9 | 4275 | 99.7 | Minus |
| 3L | 28110227 | 3L | 6188524..6188871 | 464..117 | 690 | 79.9 | Minus |
| 3L | 28110227 | 3L | 6183767..6183863 | 980..884 | 395 | 93.8 | Minus |
| 3L | 28110227 | 3L | 6180870..6181006 | 858..722 | 370 | 84.7 | Minus |
| 3L | 28110227 | 3L | 6188055..6188157 | 858..756 | 350 | 89.3 | Minus |
| 3L | 28110227 | 3L | 6181482..6181653 | 273..102 | 260 | 76.7 | Minus |
| 3L | 28110227 | 3L | 6181274..6181379 | 463..358 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:17 has no hits.
FMO08214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:09 Download gff for
FMO08214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 238..1265 | 9..1029 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:34 Download gff for
FMO08214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 120..1147 | 9..1029 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:55 Download gff for
FMO08214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 120..1147 | 9..1029 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:55 Download gff for
FMO08214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6183931..6184801 | 9..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:34 Download gff for
FMO08214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6177031..6177901 | 9..877 | 99 | | Minus |
