FMO08215.5prime Sequence
872 bp (872 high quality bases) assembled on 2010-03-11
> FMO08215.5prime
CAGTCGACATGTCCAGTTCAAATGGAGGCGTGGCATCAGGGGCCGCGGGA
AGCAGCGGCGTCGCTTCGCCTGGCGATTGGATTTGCCCAGATTACGACTG
TCGCCATCTGAACTTCGCCCGCCGTTTGCAGTGCAACAAATGCGACCGGG
ACCGCGATGGCAGTGATAAGCCGGAGCGCGACAGGGATCGAGACCGGGAG
CGGGAACGCGGCAACGGGAGCAGCAGCAGTAGCAGCAGCTCAAGCAAGAA
AAAGCTGGGCACCGAGATCGGCAAGGCGGCGGCCGACAAGTCGCGGGGCT
TGTTCAGCGCCGAGGACTGGCAGTGCAGCAAATGCGCGAATGTGAACTGG
GCCCGTCGCCAAACCTGCAATATGTGCAACGCTCCTAAGTTCTCGGATGT
GGAGGAGCGGACTGGCTTTGGCGGTGGATACAATGATCGCGGCGTGGTAG
AGTACAAGGATCGTCAGGATTCGGATAGCGAGTACGATGAGTTCGGTCGT
CGCAAGAAGCGAAAGCACGGCGAGCATAGAGAGGACTCAAAGAGGCCCAG
AAGGTCTAGCCGAGATGAGCAGCGGAATGATGAGGAAGAAGATGAGGACG
ACGACGAGGGAGACGACGAGGATCTATCAAAGTACGATCTCTGGGGCGAC
GAAGAAGTCACTTCCACGGATGTCAAGAGCAAAGAGGGCACTGGCAATGG
CGACAAGGAGCGCAAGCGTACCTCACGCGACTCTACCTCTTCCGTGTCCT
CCTCGTCGTCGTCCAGTTCGTCCAGCTCCAGCGACTCTTCGTCGAGCAGC
TCGAGTAGCTCCAGCAGCGGCGGCAGGCGGAAAACCTCCTCGTCGGGCAG
ACGTGCAAGCTTTCTAGACCAT
FMO08215.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3732-RA | 1262 | CG3732-RA | 180..1028 | 6..854 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22639041..22639481 | 854..414 | 2205 | 100 | Minus |
| 2R | 25286936 | 2R | 22639536..22639853 | 415..98 | 1590 | 100 | Minus |
| 2R | 25286936 | 2R | 22639931..22640022 | 97..6 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6861 | 133..249 | 136 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2281..2405 | 145..274 | 134 | 58.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 193..283 | 129 | 66.3 | Plus |
FMO08215.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:11 Download gff for
FMO08215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3732-RA | 138..995 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:57 Download gff for
FMO08215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3732-RA | 176..1033 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:11 Download gff for
FMO08215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3732-RA | 176..1033 | 1..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:11 Download gff for
FMO08215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22639036..22639480 | 415..861 | 99 | <- | Minus |
| 2R | 22639537..22639853 | 98..414 | 100 | <- | Minus |
| 2R | 22639931..22640024 | 1..97 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:57 Download gff for
FMO08215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18526541..18526985 | 415..861 | 99 | <- | Minus |
| arm_2R | 18527042..18527358 | 98..414 | 100 | <- | Minus |
| arm_2R | 18527436..18527529 | 1..97 | 96 | | Minus |
