Clone FMO08216 Report

Search the DGRC for FMO08216

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:82
Well:16
Vector:pMK33-CFH-BD
Associated Gene/TranscriptOdsH-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08216.5prime Sequence

484 bp (374 high quality bases) assembled on 2010-03-11

> FMO08216.5prime
CAGTCGACATGGATCAGCTAATACAACAGCTGCAACAGGCAGCTGCTGCT
CGGGGACAAGTCCAACATCCCCATGGTTCATCCGCTTTGCAACTTTACGC
GGCAGCAGCGGCTGTCAACATGCAAGTGAGCGGCTGGTCATCCGTTCTCA
ACTTGTCCATGGATGCCCCAAATCCGGAAATTAGTCCCAATTCCGTAACC
AATTCGTCCTCCGTGTATATGATCCGCCAAATGGCGCTGATACAGCAAGC
CAGAGTGGCCGCCGCAGCAGTGGCAATGCAGCAGCAGCAGCAACAGCAAA
GGGATCTCAATCGGGAGCTTGGCATGGGATCCGCCACAGTGGAGCAGCGT
ATTAAGTTGGACTCAGTGGTCACCCACGCCACAACATCCACGCGGGGCTC
TAGCCCGGGATCAAACAGAATCCGCTTAACCATGAAGGGGCCGATTCCAA
TCGGGGGCAAAATGATTGGTACAAGTCCCCGAAA

FMO08216.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-RA 1289 CG6352-RA 58..527 9..483 2025 96.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17791067..17791449 9..396 1690 98.7 Plus
X 23542271 X 17811691..17811753 406..468 210 88.9 Plus
Blast to na_te.dros performed on 2014-11-28 20:11:50 has no hits.

FMO08216.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:11 Download gff for FMO08216.5prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 9..485 1..481 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:59 Download gff for FMO08216.5prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 49..525 1..481 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:12 Download gff for FMO08216.5prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 49..525 1..481 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:12 Download gff for FMO08216.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17791058..17791448 1..395 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:59 Download gff for FMO08216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17685091..17685481 1..395 97 -> Plus