FMO08217.5prime Sequence
1106 bp (1015 high quality bases) assembled on 2010-03-11
> FMO08217.5prime
CAGTCGACATGCTTTTGAGCAATCAGCCGGCGAATACGAAACCGCAGCAA
ACGCCTTCGCCGTCGCAGACGCAGAACTTCAAGTCGAAGCTGCAGCAGCA
GATTGTTTCGGCAGCGGCGGCGGCAGCGGCGAACATAGCCAACGGCAGCA
GCCATCATCATCATCATCAGAACCATCATCATCACCATCCGCTGAACAAC
CATCATAATCACAATCACAATCAGCACAACATTTCCTTCGCCACGGATTT
CTCAATTGCGGCGATTATGGCGCGCGGCGGAAACGCCCCAAGCAGCCGCG
AACCTTCGGAACGCAGTCTGAGTCCCGCATCTGTGGAGCGCTATTCAGGC
CAGGATGCGGACGATGATGTTGACGTTGATGTGGTCGACTGCAGTGACTC
GGAAATGCCGTCGGCAACTGCGGCAGCAGCAGCGGCGGCAACAACAGCAG
CGGCTGCAGCGGCAGCATTGCAGGCGCAGCAACAAGCGCGTCAGGCATTG
CGTGTTGCACAGCAACAACAGCAGCAGCAGCAACAACAAAGGCAGCAGAC
ACATCACCACGCAACAACTGGCAAGCAACAACGCCAACATCACAATCATC
ACAGCAGCAACACCAACAACAGCAGCAACTCAGGCAACAGCAACACCAAC
AGCAAATCAAGCAGCCAGCGAGGGCGTTCTGCTGCCGCAGTGGGAGCCGC
TGCCACGCCCTCGCCACCGCCGCCCCCGCCCTCGCAAAGTCCGGAGGAAC
TCGAACGCCTGTCGCCAGAGGAATCACCAGCCCAGCAGCCCACGCCCAAG
ATAGTGGGCTCGTGCAACTGCGACGATCTCACGCCCGTCCAGTGCCACCT
GAGACCAAGGAGCTGTGGGATAAGTTCCATGAATTGGCACTGAAATGATC
ATTACCAAATCGGGCAGACGCATGTTTCCCACCGTTCGAGTGAGTTCTCG
GGTCTTTGCGCAAATCAGCAGCTGACGATATGCCGTACTTTTGGATGTGG
TACCACTGGATCGCGGCGATACGTTCGCCTAACATCGCGTCTGGCTGGTA
GCGAAAGGCGATCGCGCCACCTCCCGCAATTAGCAATCGATTGTTCCTGA
TCGAGA
FMO08217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| H15-RA | 2617 | CG6604-RA | 601..1694 | 9..1082 | 4935 | 97.9 | Plus |
| H15-RB | 2926 | CG6604-RB | 248..1338 | 9..1082 | 4880 | 97.6 | Plus |
| mid-RA | 2920 | CG6634-RA | 793..955 | 795..954 | 335 | 81.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5406911..5407374 | 322..785 | 2320 | 100 | Plus |
| 2L | 23513712 | 2L | 5404880..5405194 | 9..323 | 1575 | 100 | Plus |
| 2L | 23513712 | 2L | 5407681..5407817 | 783..917 | 585 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:13 has no hits.
FMO08217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:12 Download gff for
FMO08217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| H15-RA | 539..1579 | 9..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:36 Download gff for
FMO08217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| H15-RA | 601..1641 | 9..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:50 Download gff for
FMO08217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| H15-RA | 601..1641 | 9..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:50 Download gff for
FMO08217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5404880..5405192 | 9..321 | 100 | -> | Plus |
| 2L | 5406911..5407374 | 322..785 | 100 | -> | Plus |
| 2L | 5407684..5407817 | 786..917 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:36 Download gff for
FMO08217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5407684..5407817 | 786..917 | 98 | -> | Plus |
| arm_2L | 5404880..5405192 | 9..321 | 100 | -> | Plus |
| arm_2L | 5406911..5407374 | 322..785 | 100 | -> | Plus |
