FMO08219.5prime Sequence
959 bp (845 high quality bases) assembled on 2010-03-11
> FMO08219.5prime
CAGTCGACATGGAGTTCAGTGCGGATCTGAATGGCTTCAATGAGGACTCC
ATCGAACCCTGCCGGACTTGCGGAATTTACTTTACCATGGGAATGGACAT
GGACCAGGCGATTGTGAAGCCCATTTTCGGTTCGGATGACGCCGCCGTCG
CAGATATGGCGGAGATTCTCGAGCAAATGAATGATTGGAACATAAAGGTT
GCGAGGGAAGACGGACGACCGCAGTACATGTGCATCGCTTGCATTGCCGA
GTTTCACCGGCTGATTAAATTCAAGCGCAGCTGTGTGGAGACACAGGAGC
AGTTCGGCGAGCTCGAGTACCAGCGCGAACATAATGGCATCGTTATTAAA
CGGGAAATTGAGCCGGAGGAAGAGAAATTCTGCGGATTTATATATCTGGA
TACCGACGAGGAGGATAACAGCGACGAGGACGGTAGTAGACGCGTGTGTG
CCGTCTTCGACATACCGCATGTGCCCATTAAGGAGGAACACATGGCCCGA
GTGCCATTACAGAACAGTGACAAGTTTCAGCCACCCGAACCCAAAAATTT
TGCGTCGCCAGTCGACTCCAGATTCGACATGATAGACAACGATGCGTTAA
CGTCCGGCATGTTAGGACCGTCTATTGAGGATCTCTCCGGGACGGTCGAC
GATGGCACCGAAGATGAGGAGGAGGAGGAGGAGGAGATAGTCAGATTTAC
ATACGATGATGACAACGATGCGGCAGCCCCGCTTCCGCCCCCGCTTTACT
CGCGGTTGTGTGTTGTAGGCTATGCTTTTACGAATCCCCCGAACAGGATG
CGCATATGGAGCACATGCCGCCGCACCCATCTCTCAAGGACTGGGATTGC
CATATTTGCGCAAAAAGTTCACAAATGCCCAAAGAATCCGCGCATCAAGT
TCACATCAAGTATCCACAAGCCTACAGCGGTCACGTAATGTCCGGTTTGC
GGTTCATCT
FMO08219.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(var)3-9-RA | 2136 | CG11971-RA | 84..1036 | 8..959 | 4410 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8991910..8992631 | 914..194 | 3230 | 98.6 | Minus |
| 3R | 32079331 | 3R | 8992673..8992866 | 201..8 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:34 has no hits.
FMO08219.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:20 Download gff for
FMO08219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11971-RA | 71..1032 | 1..959 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:52 Download gff for
FMO08219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(var)3-9-RA | 75..1036 | 1..959 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:09 Download gff for
FMO08219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(var)3-9-RA | 75..1036 | 1..959 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:09 Download gff for
FMO08219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8991865..8992627 | 198..959 | 97 | <- | Minus |
| 3R | 8992677..8992869 | 1..197 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:52 Download gff for
FMO08219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4817587..4818349 | 198..959 | 97 | <- | Minus |
| arm_3R | 4818399..4818591 | 1..197 | 97 | | Minus |
