FMO08220.5prime Sequence
1041 bp (931 high quality bases) assembled on 2010-03-11
> FMO08220.5prime
CAGTCGACATGCGATGTGCCGTGCCCAATTGCCGAAATTTCTCTGACTGC
CGCTCCAAAAGGAATGCGGCTCAGCAGCAACGCTTGGGCTTCTTCCGCTT
CCCCAAGTGCCCGGATACGTTTAAGGCTTGGCTAGCATTCTGCGGCTACA
CGGAGGAGTCCTTGAAATTGAAGAATCCCTGCATTTGCATCGAACATTTC
AAGGATGAGGACATCGAGGGATCCCTGAAATTCGAAATGGGATTGGCAAA
AAAGCGCACTTTGCGACCAGGTGCAGTTCCCTGCGTGAACAAAAGCCAGG
AAAGTGGATCGGATAGAGCCCGTAAGGAGAGGTCACAGCGCCGCAGAAAC
CAGGAGCTAGTGGCTGAGCTATTGGCGGAGGAGGAGGCCAAGCTAATCCA
CCCGGAGGCTACTTCATTTGAGCAGGATAGTGTGTATTTATCGGAAACTG
TAACCATGGAATTGGATCCACTTTCGGGCGAGGAAAAGTTGGAAGAGCTG
CAAAAGTGCCGCACATGCTACAATGACTTCACCGCTGACTTCAGGGCCAA
GGATCTCTTTGACCCGGCCAACAGTGTCCTGCTCTTTCACATCGAAGTCA
TAAGTGGTGTCTGGATCAGTCACAAACCAGACGAGCCGCGCCTCATGTGC
CCTGCGTGTAAATCGGCCCTGGATCAGGCCATCGATTTCCGGGAGATGTG
CATCAGCACCGAGCTCAAGCTCAGCCAAGCCAAGCCCTCAACTGATGAAG
TGCAGATCGAGGCTGAGAATGAGAATCCAATATCATCGGATCACGATTTG
ATATCTGATACGGAGAACACTAATGTGGAAGAGATTGAGATGCAGTGAGA
TCATGTTGAAGATGAGCGACATCAGATGACCAACAGTCAGAGGCAGTCGA
CGAAGTCGCTGAATCGCCCGCCGCCCAGGATCCACTCAGTGGTGCCTGGG
GGGCCAAGATCTTTAAGAGCTATAATCAATAAAGGGAGAAAAAGCATGAC
TCAGGAGGGAGACCATCGCGAGATAGCCAAAGCTAGAAGGG
FMO08220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6689-RA | 1909 | CG6689-RA | 50..1094 | 9..1035 | 4665 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11219352..11219726 | 614..240 | 1875 | 100 | Minus |
| 3R | 32079331 | 3R | 11218932..11219292 | 967..614 | 1420 | 96.1 | Minus |
| 3R | 32079331 | 3R | 11219783..11220015 | 241..9 | 1165 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:44 has no hits.
FMO08220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:22 Download gff for
FMO08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-RA | 30..1020 | 9..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:40 Download gff for
FMO08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-RA | 50..1040 | 9..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:10 Download gff for
FMO08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-RA | 50..1040 | 9..987 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:10 Download gff for
FMO08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11218907..11219291 | 615..987 | 95 | <- | Minus |
| 3R | 11219352..11219725 | 241..614 | 100 | <- | Minus |
| 3R | 11219784..11220015 | 9..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:40 Download gff for
FMO08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7044629..7045013 | 615..987 | 95 | <- | Minus |
| arm_3R | 7045074..7045447 | 241..614 | 100 | <- | Minus |
| arm_3R | 7045506..7045737 | 9..240 | 100 | | Minus |
