FMO08221.5prime Sequence
1055 bp (923 high quality bases) assembled on 2010-03-11
> FMO08221.5prime
CAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGTACCATGCC
GTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTGGACGAGGG
CGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCGCAACAAGT
TGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCGATGGCTCC
CATCCGCCACCCATCGTGGCCAACAATCCAAAGAGCCACAAGGCAGCGAA
TGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATCACACCAAC
ATATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTAAGTCGTCC
GCTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTGCCCATCAA
GCAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTACCTCGGCTG
CAAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGACAGGGTTCC
ATTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCTGTTAACAT
CACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCGAGTGCTCA
CCATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGACCCAAATT
CTGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCACCACGTTGGC
CTCGTCTGTGCTTCAGCAGCACGTAAACGCAGCGCTAAGCAGCGCCAATC
ACCAGAAAACTCTTGCCGCCGCCAAGCAATTGGACGGTGCCCTGGACTCC
TCCGATGAGGATGAAAGCGAGGAGAGCGACGACACATCGACACGATGACG
ACGATGACCTAGACAGGACGATGACGAGGATGCGGAGCACGAGATGCTGC
CGAGGAGGAGCCGCTCAACAGCGAAGACGATGTCACCGACGAAGACTCTG
CCGAAATGGTTGACCAGATTACGTGATTGTTGCCAGACGATAAAGATCCC
AGGTCGCGAACAAATTGAATTCTATCTCAAATGGCATCTTGACATGCGGG
CAGAC
FMO08221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIA-L-RA | 1595 | CG5930-RA | 173..1226 | 9..1050 | 4860 | 98.2 | Plus |
| TfIIA-L-RB | 1586 | CG5930-RB | 173..1217 | 9..1050 | 4715 | 97.3 | Plus |
| TfIIA-L-RC | 1440 | CG5930-RC | 50..1071 | 32..1050 | 4600 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27255088..27255395 | 241..548 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 27255456..27255663 | 549..756 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 27254527..27254728 | 32..233 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 27255726..27255955 | 757..981 | 870 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:15 has no hits.
FMO08221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:24 Download gff for
FMO08221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RA | 164..1226 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:55 Download gff for
FMO08221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RA | 164..1226 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:37 Download gff for
FMO08221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RA | 164..1226 | 1..1050 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:37 Download gff for
FMO08221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27254528..27254728 | 33..235 | 99 | -> | Plus |
| 3R | 27255084..27255395 | 236..548 | 98 | -> | Plus |
| 3R | 27255456..27255663 | 549..756 | 100 | -> | Plus |
| 3R | 27255726..27255970 | 757..995 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:55 Download gff for
FMO08221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23081448..23081692 | 757..995 | 95 | -> | Plus |
| arm_3R | 23080250..23080450 | 33..235 | 99 | -> | Plus |
| arm_3R | 23080806..23081117 | 236..548 | 98 | -> | Plus |
| arm_3R | 23081178..23081385 | 549..756 | 100 | -> | Plus |
