FMO08223.5prime Sequence
1037 bp (882 high quality bases) assembled on 2010-03-11
> FMO08223.5prime
CAGTCGACATGTCGGCGCAGGGTGAAGGGGGCGGTGCTGGCGGAAGCGGC
GGCGGTGGTGCTGGTTCGGATGGAGGCGGCAATGCTGGCCAAAGCTCCAC
GGGGAGTGGCACAGTGGCGGTCACCAACGGAGGCAACTCGTCCGCCAAAA
ACCAGCTGCCGCTCACCCCGCGCTTCACCGCCGAGGAAAAGGAGGTCCTG
TACACCCTGTTCCATTTGCACGAGGAGGTCATCGATATCAAGCATCGCAA
GAAGCAGCGCAACAAGTACTCCGTCCGAGAAACATGGGACAAGATCGTCA
AGGACTTCAACTCGCACCCGCATGTGAGCGCCATGCGGAATATCAAGCAG
ATCCAGAAATTCTGGCTAAACTCCAGACTCCGCAAACAGTATCCGTACAG
GGATGGCAGCTCCTCAAATCTCAGCTCTGGTAGCGCCAAAATCAGCTCCG
TATCCGTGTCCGTTGCGTCGGCGGTGCCACAACAGCAGCAGCAACAGCAT
CACCAGCAGCATGACAGCGTTAAGGTGGAACCCGAGTACCAGATTAGTCC
CGATGCCTCCGAGCACAATCCACAGGCGGACACATTCGACGAGATCGAGA
TGGATGCCAACGATGTGAGCGAGATTGACGAGGACTCAATGGAGCAGCAG
CAGCAACAGCAGCAGGAGGCTCAGGCCCAAGCCCAAGCCCAAGCCCAAGC
TCAGGCCCAAGTGCAATTCGCCGCCGCCGAGATGCAGAAGATGCAACAGG
TGAACGCGGTGCTGCGGCGGCGGCGGCCAATGCCACCATGATCAACACCC
ACCAGATAAACGTGACCAGATCAGTGCTGAGAGCTGACTCTGAATGATCT
GCTGCACTTCAAGACAGCTCGCCCCCGCGAGGAGATCATATGATTAGCAC
CCAGAGGCTACGCCACCCAGATCCACACCATACCCACCAGGCGCAGCAGC
ATCAATGGCACATTACGCGGCGCTACAATCAGCAAATATATATGGAATCA
AGCCAGCATCACTTTGCCAGTATACAAGCTCAACACA
FMO08223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| z-RC | 2412 | CG7803-RC | 342..1330 | 9..984 | 4590 | 98.5 | Plus |
| z-RB | 2412 | CG7803-RB | 342..1330 | 9..984 | 4590 | 98.5 | Plus |
| z-RA | 2599 | CG7803-RA | 529..1517 | 9..984 | 4590 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2448784..2449325 | 375..911 | 2430 | 98.7 | Plus |
| X | 23542271 | X | 2448297..2448664 | 9..376 | 1840 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2664 | 477..811 | 198 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..7267 | 476..1024 | 168 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2977 | 473..673 | 163 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6812 | 476..518 | 154 | 86.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6870 | 476..541 | 148 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6825 | 476..511 | 144 | 88.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6862 | 476..515 | 137 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2338 | 430..511 | 136 | 67.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1143 | 480..511 | 133 | 90.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2627..2966 | 476..824 | 127 | 53.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2989 | 477..664 | 127 | 59 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1118 | 476..518 | 127 | 79.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1117..1180 | 476..537 | 125 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1564 | 480..511 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 480..511 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6884 | 477..518 | 122 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2798..2832 | 476..510 | 121 | 82.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3324 | 480..513 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2431 | 476..505 | 114 | 86.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6908 | 385..518 | 113 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2836 | 477..511 | 112 | 80 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1129..1163 | 476..510 | 112 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6643 | 480..527 | 111 | 72.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8099 | 480..527 | 111 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2484 | 480..510 | 110 | 83.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2403 | 476..518 | 109 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6569 | 480..518 | 109 | 79.5 | Plus |
FMO08223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:07 Download gff for
FMO08223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RB | 321..1324 | 1..992 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:53 Download gff for
FMO08223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RA | 522..1525 | 1..992 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:10 Download gff for
FMO08223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RA | 522..1525 | 1..992 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:10 Download gff for
FMO08223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2448290..2448664 | 1..376 | 98 | -> | Plus |
| X | 2448786..2449327 | 377..912 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:53 Download gff for
FMO08223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2342323..2342697 | 1..376 | 98 | -> | Plus |
| arm_X | 2342819..2343360 | 377..912 | 98 | -> | Plus |
