FMO08227.5prime Sequence
1089 bp (982 high quality bases) assembled on 2010-03-11
> FMO08227.5prime
CAGTCGACATGGCCGCCGCGCAGGTGGAGATGCACGCTGCTCCGGCGGCT
CCCCATGTCGATCGAAATCCCAGCAGCGACTGGCGACAGTGGTGTCGCCT
GTGCGCCAAGGACGACGTGCAAGGCAACTTGAATGTGTTCCTCAAGAACG
AGGATTCCGGCGAGGCAGCCTCCATGGAACTGGCCACCGCCATTGGCAAG
TACTTCTGGGTGAATATAACTCGAGGTGAAGAGCTGCCGGAGACGATATG
CAGTGAGTGCCTGTCGCTGGTCACCTCGCTGGTGAATTTCTCGGAACGGA
TTACCCGCGTGCAGAAGCTTTACTGCATCCTGCAGAGCACGCCCAGCCAG
GAGAGGCCAAATCTCCACGAGCTGCGCTCGAAATTTGGTTTGCTGGACGA
GGAGACGCAGACTGAGGTGCACTATGTGGACAAGAAGCCGAAGTTGGATG
AACAGCTCGAGTTTCTGCCAGAGGAGTCGCCTTACGAGCTGGCAAACCCA
CTAACGCCAGAGGAAAAGCAGGAAAGCGTAGATCAGGAGCAGGATCAGCC
GACGGAGGAGCCAGATGAGCAGGATGCCGACTACGAACCGAATGAAGATC
GTGTACTAATGAGCCTCTGCGATGTGTATGGCATTCAGGAGGATAACTCT
TCTGCTGGCAGCTTGGATGGCTCCTCGCCGAGTACCGAAAAAGCTGGAGA
GGATGCAGCAGACTCTGAGAAAAGACACCAGTGCAACGAGTGCTTGCGAA
GCTACGCCACGTCCAAAACCCTGCAGCGCCACCTGCGCCAGGATCATGGC
CAGACTGAGCCCACACCCGAGCAGCTGCAATGCCCGGATTGCCCCAAGAG
TTTCGTCTACACTACCAGCTGGAGAGGCACATGAAATGGCACGTGCCCTG
CCCAAGCGCAAGCAGTACGCCTGTAGCAGTTGCGACAGAAGTTCGCCACC
AGTGCATCCGCCCAGCAGCACGAGCAGTACATGACCTGATGAGCGGCCCC
GGCCGGGTGATTTGCGAACATGCGGTGGTGGTGTGCACTCATGACGCGCT
CAGGACCGTCTCTAGACCGCATCAGCCCCCTCAAGTCGA
FMO08227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10366-RA | 2062 | CG10366-RA | 112..1162 | 9..1052 | 4960 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19584630..19585459 | 216..1040 | 3730 | 98.6 | Plus |
| 2L | 23513712 | 2L | 19584346..19584552 | 9..215 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:17:26 has no hits.
FMO08227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:31 Download gff for
FMO08227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10366-RA | 86..1142 | 5..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:44 Download gff for
FMO08227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10366-RA | 110..1166 | 5..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:02 Download gff for
FMO08227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10366-RA | 110..1166 | 5..1055 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:02 Download gff for
FMO08227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19584344..19584552 | 5..215 | 99 | -> | Plus |
| 2L | 19584630..19585477 | 216..1055 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:44 Download gff for
FMO08227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19584344..19584552 | 5..215 | 99 | -> | Plus |
| arm_2L | 19584630..19585477 | 216..1055 | 98 | | Plus |
