FMO08228.5prime Sequence
1004 bp (930 high quality bases) assembled on 2010-03-11
> FMO08228.5prime
CAGTCGACATGGAAACGTGCCGCACCTGTGCGATTTCCATGTTCGTGTGC
GATTTCGAAAATGGCAGCAATAACAGCCACTTCCTGGACCTCCATCATCC
CAACTGCTGGCCCAGCGAAATGGCCCAGATTCGCCTCCAGTTCGCCAACT
GGAATCTAAAGATATCTCCCAACGATGGACTGCCCCAGAAGATCTGCAGC
GACTGCTTCACCAAGTTCTGCTCGATCAACGCATTCCGCTTGGCCTGCCA
GGAGGCACAGCTGAAGCTGTCCCACATCTACGACAAGATCGATGCCAGCA
GCCTGGAAGATGATGAGATTGGACAGGAGGACTTGGAGCCAGCGGAAGAG
CATCAGGAAACGGAAACTACCAAACCAACAACGACGGTTTCAGCCGAAAC
ACAACCAAACAACACTGCCAGTGATCCCATAGAGATTTTCGTGGATGCCG
TAGACATCGACGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAG
CAGTATGATGAGGAGGTGGAGGAACCAATCACGGATGAGTCTGCTCCCCC
ACAACTGACCATTAGCTATGCCTGCAAGTTCTGTCTGCGCCCGCAGGAGA
ACTACCAGCTGCAGCAACTCTTGTTGGAGCACATCAACGCTAGCCACGAT
CCGGAGCAACCGTACAATTGTCCGGAGTGCGAGGCACGCTTTCAGGACGC
CGCATCGCGCACAGTTCACCTGAAAAGCAGCCACGTGGAGAAGCAACATG
CCTGCGGCGTGTGCGGCAGAAGTACGGCGACAGGCACAATCTGCGCCACC
ACGTTGAGAAGTACCATTCGGAGACGGACTTTGAGTGCGCGCTATGCGAG
AAGCGCTTCTACCCTGCAGAGCTCCACTATCACATGAAGTGGCACATTCC
GGATCGCCAGTCAAGTGTCGCCCCAGCGATGCTAGCGATCTTTATCAGTC
AGCGGCTCTTCTGGGCCACAGGCCACCCCTCCGGGTCTATTCAGGAAAAC
AGAC
FMO08228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8301-RA | 3094 | CG8301-RA | 663..1642 | 8..978 | 4525 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9583452..9584255 | 160..956 | 3570 | 98 | Plus |
| 3R | 32079331 | 3R | 9581968..9582121 | 8..161 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:27 has no hits.
FMO08228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:32 Download gff for
FMO08228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 651..1616 | 1..959 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:37 Download gff for
FMO08228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 657..1622 | 1..959 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:05 Download gff for
FMO08228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 657..1622 | 1..959 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:05 Download gff for
FMO08228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9581962..9582121 | 1..161 | 98 | -> | Plus |
| 3R | 9583454..9584259 | 162..959 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:37 Download gff for
FMO08228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5407684..5407843 | 1..161 | 98 | -> | Plus |
| arm_3R | 5409176..5409981 | 162..959 | 98 | | Plus |
