FMO08229.5prime Sequence
1117 bp (1005 high quality bases) assembled on 2010-03-11
> FMO08229.5prime
CAGTCGACATGCAGACAGCCACTCCTCTTAACTCTTCGGAAAGCGGTGGC
GCAAGCAACTCCGGGGAGGGTAGTGAACAGGAGGCGATTTACGAGAAGCT
TCGGCTGTTAAATACTCAGCACGCTGCAGGACCAGGACCACTGGAGCCTG
CCAGAGCAGCGCCCTTGGTAGGTCAATCACCCAACCACCTAGGAACCCGA
TCCAGCCACCCCCAGCTGGTGCACGGTAACCATCAGGCACTACAGCAGCA
TCAACAGCAGAGCTGGCCGCCCCGTCACTATTCCGGATCTTGGTACCCCA
CCTCTCTTAGCGAAATACCCATCTCATCGGCTCCCAATATCGCATCCGTT
ACGGCGTATGCATCAGGACCTTCACTTGCTCACTCACTGAGTCCACCCAA
CGACATCGAAAGCCTGGCCAGTATCGGTCACCAGAGAAACTGCCCCGTTG
CAACGGAGGACATACATTTAAAAAAAGAACTTGATGGTCATCAGTCCGAT
GAAACGGGCTCCGGTGAAGGTGAAAACTCCAATGGTGGCGCTTCAAATAT
AGGAAACACTGAGGATGATCAAGCTCGGCTCATACTAAAAAGAAAGTTGC
AACGCAATCGAACATCTTTCACGAACGACCAGATAGACAGTCTTGAAAAA
GAGTTTGAACGAACACACTATCCAGATGTTTTTGCCCGCGAACGTTTGGC
TGGAAAGATTGGGTTGCCAGAGGCAAGAATTCAGGTTTGGTTCTCAAACC
GTCGAGCAAAATGGCGTCGCGAGGAGAAGCTGCGAAACCAGCGAAGAACA
CCAAATTCCACAGGAGCTAGTGCAACTTCTTCCTCTACATCGGCAACCGC
CTCTTTGACTGACAGCCCTAACAGCCTAAGTGCTTGTTCCTCGCTGCTGT
CCGGATCAGCTGGGGGTCCCTCAGTCAGTACCATTAATGGCTTATCGTCT
CCAGCCCATTGTCTACTAATGTCAATGCTCCACGCTTGGCCCTAGGATCG
ATAGCTCTGAAAGCCAACATCCCGCACATTCGCTAGCTGCACCTCTTGAC
ATGACATGGTCGTCAGGAAATTGCAAGGAGTTGGTTCTCCATGCCATGGC
GTGGCGGATTAATTCCT
FMO08229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ey-RD | 3462 | CG1464-RD | 1337..2438 | 9..1095 | 5065 | 98 | Plus |
| ey-RC | 2902 | CG1464-RC | 777..1878 | 9..1095 | 5065 | 98 | Plus |
| ey-RA | 3282 | CG1464-RA | 1157..2258 | 9..1095 | 5065 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 714044..714512 | 9..477 | 2345 | 100 | Plus |
| 4 | 1348131 | 4 | 717652..717932 | 650..930 | 1405 | 100 | Plus |
| 4 | 1348131 | 4 | 717125..717300 | 476..651 | 880 | 100 | Plus |
| 4 | 1348131 | 4 | 719274..719363 | 928..1015 | 305 | 94.4 | Plus |
| 4 | 1348131 | 4 | 998621..998710 | 650..739 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:34:42 has no hits.
FMO08229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:33 Download gff for
FMO08229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ey-RC | 773..1894 | 4..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:52 Download gff for
FMO08229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ey-RA | 1153..2274 | 4..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:58 Download gff for
FMO08229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ey-RA | 1153..2274 | 4..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:58 Download gff for
FMO08229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 714040..714512 | 4..477 | 99 | -> | Plus |
| 4 | 717127..717300 | 478..651 | 100 | -> | Plus |
| 4 | 717654..717929 | 652..927 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:52 Download gff for
FMO08229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 734666..735138 | 4..477 | 99 | -> | Plus |
| arm_4 | 737753..737926 | 478..651 | 100 | -> | Plus |
| arm_4 | 738280..738555 | 652..927 | 100 | -> | Plus |
