FMO08230.5prime Sequence
1121 bp (990 high quality bases) assembled on 2010-03-11
> FMO08230.5prime
CAGTCGACATGAGCTTGTGGAAGCGCATCTCCAGCCATGTCGACTGCGAG
CAGCGTATGGCGGCTTACTACGAGGAGAAGGGTATGCTCGAGCTGCGCCT
CTGCTTGGCACCCTGGATCGAAGACAGGATAATGTCCGAACAAATAACGC
CCAACACTACCGATCAGTTAGAGCGCGTGGCCCTAAAGTTCAACGAAGAT
CTGCAGCAAAAGCTTCTATCCACGCGCACCGCCAGCGACCAGGCCCTCAA
GTTCCGGGTGGTGGAGCTTTGCGCCCTCATCCAACGCATCTCCGCCGTTG
AGCTGTACACGCATCTGCGCAGCGGTCTACAAAAAGAGTTGCAGTTGGTC
ACCGAGAAGAGCGTGGCTGCAACCGCAGGCCAATCAATGCCGCTAAATCC
CTACAACATGAACAACACGCCCATGGTTACCGGGTACATGGTGGACCCCA
GTGATCTTCTGGCGGTGTCCAACAGCTGCAATCCTCCAGTTGTTCAGGGC
ATAGGACCTATCCACAATGTGCAAAATACAGGCATTGCCTCCCCAGCCCT
CGGTATGGTCACACCCAAGGTGGAGCTGTACGAGGTGCAACATCAGATCA
TGCAGTCCCTCAATGAGTTTGGCAACTGTGCCAATGCCTTGAAGCTGCTT
GCCCAAAACTACAGTTACATGCTAAACTCCACATCCTCGCCGAACGCAGA
AGCTGCCTACAGAAGTCTTATCGATGAAAAGGCGGCCATCGTACTCACAA
TGCGTCGCAGCTTTATGTACTACGAATCGCTGCACGAGATGGTCATACAC
GAGCTCAAGAACTGGCGCCACCAACAAGCGCAAGCCGGAAACGGAGCTCC
CTTTAATGAGGGCTCCCTGGATGATATCCAGCGCTGCTTTGAGATGCTCG
AGAGCTTTATCGCACACATGCTGGCTGCCGTTAAGGAGCTGATGCGCGTA
CGTCTGGTCACCGAAGAGCCGGAGCCTCCACATCTGCTTGAACAGTGCGA
AACGCGCGAAGACCTGGTATGCTCTGCCTTTATCGTCCGACAACAGCCCC
CGCAAGTGATGAGAACAACACGCTTCGAGCGTCTTGTCCGTTGCTATCGG
TTCTCGACTGGCATCCAACAT
FMO08230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stat92E-RM | 4029 | CG4257-RM | 675..1780 | 8..1105 | 5145 | 98.4 | Plus |
| Stat92E-RK | 4200 | CG4257-RK | 675..1780 | 8..1105 | 5145 | 98.4 | Plus |
| Stat92E-RJ | 4023 | CG4257-RJ | 519..1624 | 8..1105 | 5145 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20540622..20541553 | 1062..134 | 4375 | 98.7 | Minus |
| 3R | 32079331 | 3R | 20541678..20541805 | 135..8 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:52 has no hits.
FMO08230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:34 Download gff for
FMO08230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stat92E-RC | 692..1781 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:44 Download gff for
FMO08230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stat92E-RJ | 513..1602 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:15 Download gff for
FMO08230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stat92E-RJ | 513..1602 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:15 Download gff for
FMO08230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20540596..20541553 | 134..1084 | 98 | <- | Minus |
| 3R | 20541680..20541809 | 1..133 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:44 Download gff for
FMO08230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16366318..16367275 | 134..1084 | 98 | <- | Minus |
| arm_3R | 16367402..16367531 | 1..133 | 96 | | Minus |
